Bug#1005479: marked as done (toil: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13)

[Debian Bug Tracking System]

Your message dated Thu, 10 Mar 2022 13:21:16 +0000
with message-id <e1nsije-000in4...@fasolo.debian.org>
and subject line Bug#1005479: fixed in toil 5.6.0-3
has caused the Debian Bug report #1005479,
regarding toil: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i 
python{version} -p "3.10 3.9" returned exit code 13
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
1005479: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1005479
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems

--- Begin Message ---

Source: toil
Version: 5.6.0-2
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20220212 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> PYBUILD_SYSTEM=custom \
>       PYBUILD_TEST_ARGS='HOME={home_dir} {interpreter} setup.py develop 
> --user && PYTHONPATH={dir}/src:$PYTHONPATH PATH={home_dir}/.local/bin/:$PATH 
> TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True {interpreter} -m pytest -vv -W 
> ignore --ignore src/toil/test/lib/aws/test_s3.py --ignore 
> src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore 
> src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py 
> --ignore src/toil/test/src/promisedRequirementTest.py --ignore 
> src/toil/test/lib/test_ec2.py --ignore 
> src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or 
> test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or 
> SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" 
> {dir}/src/toil/test' \
>       dh_auto_test
> I: pybuild base:237: HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil 
> python3.10 setup.py develop --user && 
> PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH 
> PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin/:$PATH 
> TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.10 -m pytest -vv -W ignore 
> --ignore src/toil/test/lib/aws/test_s3.py --ignore 
> src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore 
> src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py 
> --ignore src/toil/test/src/promisedRequirementTest.py --ignore 
> src/toil/test/lib/test_ec2.py --ignore 
> src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or 
> test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or 
> SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" 
> /<<PKGBUILDDIR>>/src/toil/test
> /<<PKGBUILDDIR>>/setup.py:14: DeprecationWarning: the imp module is 
> deprecated in favour of importlib and slated for removal in Python 3.12; see 
> the module's documentation for alternative uses
>   import imp
> running develop
> /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:158: 
> EasyInstallDeprecationWarning: easy_install command is deprecated. Use build 
> and pip and other standards-based tools.
>   warnings.warn(
> /usr/lib/python3/dist-packages/setuptools/command/install.py:34: 
> SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and 
> pip and other standards-based tools.
>   warnings.warn(
> running egg_info
> creating src/toil.egg-info
> writing src/toil.egg-info/PKG-INFO
> writing dependency_links to src/toil.egg-info/dependency_links.txt
> writing entry points to src/toil.egg-info/entry_points.txt
> writing requirements to src/toil.egg-info/requires.txt
> writing top-level names to src/toil.egg-info/top_level.txt
> writing manifest file 'src/toil.egg-info/SOURCES.txt'
> reading manifest file 'src/toil.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> adding license file 'LICENSE'
> writing manifest file 'src/toil.egg-info/SOURCES.txt'
> running build_ext
> Creating 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/lib/python3.10/site-packages/toil.egg-link
>  (link to src)
> Adding toil 5.6.0 to easy-install.pth file
> Installing _toil_contained_executor script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing _toil_mesos_executor script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing _toil_worker script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing cwltoil script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing toil script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing toil-cwl-runner script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> Installing toil-wdl-runner script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin
> 
> Installed /<<PKGBUILDDIR>>/src
> Processing dependencies for toil==5.6.0
> Searching for requests==2.25.1
> Best match: requests 2.25.1
> Adding requests 2.25.1 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for pytz==2021.3
> Best match: pytz 2021.3
> Adding pytz 2021.3 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for python-dateutil==2.8.1
> Best match: python-dateutil 2.8.1
> Adding python-dateutil 2.8.1 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for psutil==5.9.0
> Best match: psutil 5.9.0
> Adding psutil 5.9.0 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for enlighten==1.7.2
> Best match: enlighten 1.7.2
> Adding enlighten 1.7.2 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for docker==5.0.3
> Best match: docker 5.0.3
> Adding docker 5.0.3 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for dill==0.3.4
> Best match: dill 0.3.4
> Adding dill 0.3.4 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Finished processing dependencies for toil==5.6.0
> ============================= test session starts 
> ==============================
> platform linux -- Python 3.10.2, pytest-6.2.5, py-1.10.0, pluggy-0.13.0 -- 
> /usr/bin/python3.10
> cachedir: .pytest_cache
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> collecting ... /usr/lib/python3/dist-packages/wdlparse/__init__.py
> collected 561 items / 44 deselected / 517 selected
> 
> src/toil/test/__init__.py::toil.test.make_tests PASSED                   [  
> 0%]
> src/toil/test/__init__.py::toil.test.timeLimit PASSED                    [  
> 0%]
> src/toil/test/batchSystems/test_lsf_helper.py::LSFHelperTest::test_parse_mem_and_cmd_from_output
>  PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_many_all_exist
>  PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_exists
>  PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_not_exists
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_exists
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_not_exists
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_some_exists
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_all_exist
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_none_exist
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_some_exist
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_exists
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_not_exists
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_all_exist
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_none_exist
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_some_exist
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_exists
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_not_exists
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_exists
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_not_exists
>  PASSED [  4%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_exists
>  PASSED [  4%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_not_exists
>  PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testBatchCreate 
> PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testChildLoadingEquality
>  PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testCleanCache 
> SKIPPED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testConfigEquality 
> PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionIdempotence
>  PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionOfCorruptedJobStore
>  SKIPPED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testEmptyFileStoreIDIsReadable
>  FAILED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testFileDeletion 
> SKIPPED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testGrowingAndShrinkingJob
>  PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testImportHttpFile 
> PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testInitialState 
> PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobCreation 
> PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobDeletions 
> PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobLoadEquality
>  PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testLargeFile 
> SKIPPED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testMultipartUploads
>  SKIPPED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPartialReadFromStream
>  PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPerJobFiles 
> PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPersistantFilesToDelete
>  PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPreserveFileName
>  PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteFileStreamTextMode
>  PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteSharedFilesTextMode
>  PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testSharedFiles 
> PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testStatsAndLogging
>  PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testUpdateBehavior 
> PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testWriteLogFiles 
> PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testZeroLengthFiles
>  PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_does_not_leak_symlinks
>  PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_init_preserves_symlink_path
>  PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest
>  <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testBatchCreate 
> SKIPPED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testChildLoadingEquality
>  SKIPPED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testCleanCache 
> SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testConfigEquality
>  SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionIdempotence
>  SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionOfCorruptedJobStore
>  SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testEmptyFileStoreIDIsReadable
>  SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testFileDeletion 
> SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testGrowingAndShrinkingJob
>  SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testImportHttpFile
>  SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testInitialState 
> SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobCreation 
> SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobDeletions 
> SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobLoadEquality
>  SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testLargeFile 
> SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testMultipartUploads
>  SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPartialReadFromStream
>  SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPerJobFiles 
> SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPersistantFilesToDelete
>  SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteFileStreamTextMode
>  SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteSharedFilesTextMode
>  SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testSharedFiles 
> SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testStatsAndLogging
>  SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testUpdateBehavior
>  SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testWriteLogFiles
>  SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testZeroLengthFiles
>  SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest
>  <- src/toil/test/__init__.py SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testBatchCreate 
> SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testChildLoadingEquality
>  SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testCleanCache 
> SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testConfigEquality 
> SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionIdempotence
>  SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionOfCorruptedJobStore
>  SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testEmptyFileStoreIDIsReadable
>  SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testFileDeletion 
> SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testGrowingAndShrinkingJob
>  SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testImportHttpFile 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInitialState 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInlinedFiles 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobCreation 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobDeletions 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobLoadEquality 
> SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testLargeFile 
> SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultiThreadImportFile
>  SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultipartUploads
>  SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testOverlargeJob 
> SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPartialReadFromStream
>  SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPerJobFiles 
> SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPersistantFilesToDelete
>  SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteFileStreamTextMode
>  SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteSharedFilesTextMode
>  SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation
>  SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSharedFiles 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testStatsAndLogging 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testUpdateBehavior 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testWriteLogFiles 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testZeroLengthFiles 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest
>  <- src/toil/test/__init__.py SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::InvalidAWSJobStoreTest::testInvalidJobStoreName
>  SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testBatchCreate
>  SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testChildLoadingEquality
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testCleanCache
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testConfigEquality
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testDestructionIdempotence
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testDestructionOfCorruptedJobStore
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testEmptyFileStoreIDIsReadable
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testEncrypted
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testFileDeletion
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testGrowingAndShrinkingJob
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testImportHttpFile
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInitialState
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInlinedFiles
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobCreation
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobDeletions
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobLoadEquality
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testLargeFile
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultiThreadImportFile
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultipartUploads
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testOverlargeJob
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPartialReadFromStream
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPerJobFiles
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPersistantFilesToDelete
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteFileStreamTextMode
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteSharedFilesTextMode
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSharedFiles
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testStatsAndLogging
>  SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testUpdateBehavior
>  SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testWriteLogFiles
>  SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testZeroLengthFiles
>  SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest
>  <- src/toil/test/__init__.py SKIPPED [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean SKIPPED     [ 
> 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_FORGO 
> SKIPPED [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_None SKIPPED 
> [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_RM SKIPPED [ 
> 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_STOP SKIPPED 
> [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_FORGO 
> SKIPPED [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_None SKIPPED 
> [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_RM SKIPPED [ 
> 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_STOP SKIPPED 
> [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_FORGO 
> SKIPPED [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_None SKIPPED 
> [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_RM SKIPPED [ 
> 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_STOP SKIPPED 
> [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_FORGO 
> SKIPPED [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_None SKIPPED 
> [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_RM SKIPPED [ 
> 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_STOP SKIPPED 
> [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_FORGO 
> SKIPPED [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_None SKIPPED 
> [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_RM SKIPPED [ 
> 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_STOP SKIPPED 
> [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_FORGO 
> SKIPPED [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_None SKIPPED 
> [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_RM SKIPPED [ 
> 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_STOP SKIPPED 
> [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs SKIPPED      [ 
> 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux SKIPPED [ 
> 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux_Stream 
> SKIPPED [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Stream SKIPPED [ 
> 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChain SKIPPED [ 
> 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChainErrorDetection
>  SKIPPED [ 43%]
> src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChain 
> SKIPPED [ 43%]
> src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChainErrorDetection
>  SKIPPED [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_convert PASSED [ 
> 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_hms_duration_to_seconds
>  PASSED [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_human2bytes 
> PASSED [ 44%]
> src/toil/test/mesos/MesosDataStructuresTest.py::DataStructuresTest::testJobQueue
>  PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testAddingInitialNode
>  PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testHighTargetTime
>  PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testJobTooLargeForAllNodes
>  PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLongRunningJobs
>  PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLowTargetTime
>  PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPackingOneShape
>  PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPathologicalCase
>  PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testSorting 
> PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testZeroResourceJobs
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testBetaInertia
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMaxNodes
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMinNodes
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testNoLaunchingIfDeltaAlreadyMet
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptableDeficitIsSet
>  PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptableDeficitResponse
>  PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testRounding
>  PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScaling
>  SKIPPED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingMultipleNodeTypes
>  SKIPPED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingWithPreemptableJobs
>  SKIPPED [ 47%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testSpotAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testSpotAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTestMultipleNodeTypes::testAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCERestartTest::testAutoScaledCluster
>  SKIPPED [ 49%]
> src/toil/test/provisioners/provisionerTest.py::ProvisionerTest::test_node_type_parsing
>  PASSED [ 49%]
> src/toil/test/server/serverTest.py::ToilWESServerTest::test_get_service_info 
> SKIPPED [ 49%]
> src/toil/test/server/serverTest.py::ToilWESServerTest::test_run_example_cwl_workflow
>  SKIPPED [ 49%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithConcurrentEncapsulation
>  SKIPPED [ 49%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithFailureAndEncapsulation
>  SKIPPED [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testRestart 
> SKIPPED [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testSplitRootPackages
>  SKIPPED [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testUserTypesInJobFunctionArgs
>  SKIPPED [ 50%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointNotRetried 
> PASSED [ 50%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointRetriedOnce
>  SKIPPED [ 51%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointedRestartSucceeds
>  SKIPPED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testBatchSystemCleanupCanHandleWorkerDeaths
>  PASSED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithClassMethod
>  PASSED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithFailures
>  SKIPPED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithLambda
>  PASSED [ 52%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithMethod
>  PASSED [ 52%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testNewJobsCanHandleOtherJobDeaths
>  SKIPPED [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testApplianceParser 
> SKIPPED [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadGoogleRepo 
> SKIPPED [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepo 
> SKIPPED [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepoNTag 
> SKIPPED [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayTag SKIPPED 
> [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepo 
> SKIPPED [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepoBadTag
>  SKIPPED [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testGoogleRepo SKIPPED 
> [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testNonexistentRepo 
> SKIPPED [ 54%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testOfficialUbuntuRepo 
> SKIPPED [ 54%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testToilQuayRepo 
> SKIPPED [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreLogging
>  SKIPPED [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreOperations
>  SKIPPED [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testImportReadFileCompatibility
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testToilIsNotBroken
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testAsyncWriteWithCaching
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionFailCase
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionPartialEvict
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionTotalEvict
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testControlledFailedWorkerRetry
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testDeleteLocalFile
>  PASSED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testExtremeCacheSetup
>  SKIPPED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreExportFile
>  SKIPPED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreLogging
>  SKIPPED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreOperations
>  SKIPPED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testImportReadFileCompatibility
>  PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheHitGlobalFile
>  SKIPPED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheMissGlobalFile
>  SKIPPED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCachHitFileFromJobStore
>  PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile
>  PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile
>  PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode
>  PASSED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalImmutablyReadFile
>  SKIPPED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalMutablyReadFile
>  SKIPPED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizes
>  SKIPPED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizesWithBadWorker
>  SKIPPED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testSimultaneousReadsUncachedStream
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testToilIsNotBroken
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteLocalFileToJobStore
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteNonLocalFileToJobStore
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions
>  PASSED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreLogging
>  SKIPPED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreOperations
>  SKIPPED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testImportReadFileCompatibility
>  SKIPPED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode
>  SKIPPED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testToilIsNotBroken
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testAsyncWriteWithCaching
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionFailCase
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionPartialEvict
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionTotalEvict
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testControlledFailedWorkerRetry
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testDeleteLocalFile
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testExtremeCacheSetup
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreExportFile
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreLogging
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreOperations
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testImportReadFileCompatibility
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheHitGlobalFile
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheMissGlobalFile
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCachHitFileFromJobStore
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalImmutablyReadFile
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalMutablyReadFile
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizes
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizesWithBadWorker
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testSimultaneousReadsUncachedStream
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testToilIsNotBroken
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteLocalFileToJobStore
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteNonLocalFileToJobStore
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreLogging
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreOperations
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testImportReadFileCompatibility
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testAsyncWriteWithCaching
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionFailCase
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionPartialEvict
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionTotalEvict
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testControlledFailedWorkerRetry
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testDeleteLocalFile
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testExtremeCacheSetup
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreExportFile
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreLogging
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreOperations
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testImportReadFileCompatibility
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheHitGlobalFile
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheMissGlobalFile
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCachHitFileFromJobStore
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalImmutablyReadFile
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalMutablyReadFile
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizes
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizesWithBadWorker
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testSimultaneousReadsUncachedStream
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteLocalFileToJobStore
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteNonLocalFileToJobStore
>  SKIPPED [ 74%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions
>  SKIPPED [ 74%]
> src/toil/test/src/helloWorldTest.py::HelloWorldTest::testHelloWorld PASSED [ 
> 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_basic_import_export
>  PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_false
>  PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_true
>  SKIPPED [ 75%]
> src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescription
>  PASSED [ 75%]
> src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescriptionSequencing
>  PASSED [ 75%]
> src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testAddChildEncapsulate
>  PASSED [ 75%]
> src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testEncapsulation
>  PASSED [ 75%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testCachingFileStore 
> PASSED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStore 
> PASSED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStoreWithBadWorker
>  SKIPPED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testNonCachingFileStore
>  PASSED [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testService SKIPPED [ 
> 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceDeadlock 
> SKIPPED [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceParallelRecursive
>  SKIPPED [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceRecursive 
> SKIPPED [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceSerialization 
> SKIPPED [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceWithCheckpoints
>  SKIPPED [ 77%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testService SKIPPED 
> [ 77%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceDeadlock 
> SKIPPED [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceParallelRecursive
>  SKIPPED [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceRecursive 
> SKIPPED [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceSerialization
>  SKIPPED [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceWithCheckpoints
>  SKIPPED [ 78%]
> src/toil/test/src/jobTest.py::JobTest::testDAGConsistency PASSED         [ 
> 79%]
> src/toil/test/src/jobTest.py::JobTest::testDeadlockDetection PASSED      [ 
> 79%]
> src/toil/test/src/jobTest.py::JobTest::testEvaluatingRandomDAG SKIPPED   [ 
> 79%]
> src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexNonRootCase
>  SKIPPED [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexRootCase 
> SKIPPED [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testSiblingDAGConsistency SKIPPED [ 
> 80%]
> src/toil/test/src/jobTest.py::JobTest::testStatic SKIPPED (Skipped b...) [ 
> 80%]
> src/toil/test/src/jobTest.py::JobTest::testStatic2 PASSED                [ 
> 80%]
> src/toil/test/src/jobTest.py::JobTest::testTrivialDAGConsistency SKIPPED [ 
> 80%]
> src/toil/test/src/miscTests.py::MiscTests::testGetSizeOfDirectoryWorks 
> SKIPPED [ 80%]
> src/toil/test/src/miscTests.py::MiscTests::testIDStability PASSED        [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_error PASSED [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_ok PASSED [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_install PASSED    [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_install_dev PASSED [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_call_command_err PASSED  [ 
> 82%]
> src/toil/test/src/miscTests.py::MiscTests::test_call_command_ok PASSED   [ 
> 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_nested_panic PASSED      [ 
> 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic PASSED             [ 
> 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic_by_hand PASSED     [ 
> 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic_with_secondary PASSED [ 
> 82%]
> src/toil/test/src/promisesTest.py::CachedUnpicklingJobStoreTest::test PASSED 
> [ 83%]
> src/toil/test/src/promisesTest.py::ChainedIndexedPromisesTest::test PASSED [ 
> 83%]
> src/toil/test/src/promisesTest.py::PathIndexingPromiseTest::test PASSED  [ 
> 83%]
> src/toil/test/src/realtimeLoggerTest.py::RealtimeLoggerTest::testRealtimeLogger
>  PASSED [ 83%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testLogToMaster SKIPPED 
> [ 83%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testMultipleLogToMaster 
> SKIPPED [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testRegularLog PASSED [ 
> 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteGzipLogs 
> SKIPPED [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteLogs PASSED [ 
> 84%]
> src/toil/test/src/resourceTest.py::ResourceTest::testBuiltIn PASSED      [ 
> 84%]
> src/toil/test/src/resourceTest.py::ResourceTest::testNonPyStandAlone PASSED [ 
> 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testPackage PASSED      [ 
> 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testStandAlone PASSED   [ 
> 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testStandAloneInPackage 
> PASSED [ 85%]
> src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnFailedParent
>  SKIPPED [ 85%]
> src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnKilledParent
>  SKIPPED [ 86%]
> src/toil/test/src/resumabilityTest.py::ResumabilityTest::test SKIPPED    [ 
> 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testAlways PASSED [ 
> 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testNever PASSED [ 
> 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnErrorWithError
>  PASSED [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnErrorWithNoError
>  PASSED [ 87%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnSuccessWithError
>  PASSED [ 87%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnSuccessWithSuccess
>  PASSED [ 87%]
> src/toil/test/src/systemTest.py::SystemTest::testAtomicityOfNonEmptyDirectoryRenames
>  PASSED [ 87%]
> src/toil/test/src/threadingTest.py::ThreadingTest::testGlobalMutexOrdering 
> PASSED [ 87%]
> src/toil/test/src/threadingTest.py::ThreadingTest::testLastProcessStanding 
> PASSED [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testContextManger
>  SKIPPED [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testExportAfterFailedExport
>  SKIPPED [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testNoContextManger
>  SKIPPED [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClass
>  SKIPPED [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClassFromMain
>  PASSED [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunction
>  PASSED [ 89%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunctionFromMain
>  PASSED [ 89%]
> src/toil/test/src/workerTest.py::WorkerTests::testNextChainable PASSED   [ 
> 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testFetchJobStoreFiles
>  PASSED [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testFetchJobStoreFilesWSymlinks
>  PASSED [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testJobStoreContents 
> SKIPPED [ 90%]
> src/toil/test/utils/toilKillTest.py::ToilKillTest::test_cwl_toil_kill PASSED 
> [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testAWSProvisionerUtils SKIPPED 
> [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetPIDStatus PASSED     [ 
> 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedCWLWF SKIPPED 
> [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedToilWF PASSED 
> [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusSuccessfulCWLWF 
> SKIPPED [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testMultipleJobsPerWorkerStats 
> SKIPPED [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog PASSED      [ 
> 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testRestartAttribute PASSED [ 
> 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUnicodeSupport PASSED   [ 
> 92%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsSort SKIPPED (...) [ 
> 92%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsStatsSort SKIPPED  [ 
> 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Ceil
>  PASSED [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Cross
>  PASSED [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Floor
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Length
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadBoolean
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadFloat
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadInt
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadJson
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadLines
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadMap
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadString
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadTsv
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Sub 
> PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Transpose
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteJson
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteLines
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteMap
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteTsv
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Zip 
> PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlLanguageSpecWorkflowsTest::test_type_pair
>  PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlLanguageSpecWorkflowsTest::test_v1_declaration
>  PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_as_map
>  PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_as_pairs
>  PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_ceil 
> PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_collect_by_key
>  PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_cross 
> PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_flatten
>  PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_floor 
> PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_keys 
> PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_length
>  PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_range 
> PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_read 
> PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_round 
> PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_size 
> PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_stdout
>  PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_sub 
> PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_transpose
>  PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_write 
> PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_zip 
> PASSED [100%]
> 
> =================================== FAILURES 
> ===================================
> _______________ FileJobStoreTest.testEmptyFileStoreIDIsReadable 
> ________________
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/jobStores/fileJobStore.py", line 489, in 
> read_file
>     os.link(jobStoreFilePath, local_path)
> FileExistsError: [Errno 17] File exists: 
> '/<<PKGBUILDDIR>>/jobstore-test-0b38ce93-1f24-429f-a154-4d7bd4a07086/files/no-job/file-0ca7d8bee4ce4b7285e11ba30c7e3711/stream'
>  -> '/tmp/tmps8vw9r7v'
> 
> During handling of the above exception, another exception occurred:
> 
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/test/jobStores/jobStoreTest.py", line 1039, 
> in testEmptyFileStoreIDIsReadable
>     self.jobstore_initialized.read_file(id, path)
>   File "/<<PKGBUILDDIR>>/src/toil/jobStores/fileJobStore.py", line 498, in 
> read_file
>     os.link(jobStoreFilePath, local_path)
> OSError: [Errno 18] Invalid cross-device link: 
> '/<<PKGBUILDDIR>>/jobstore-test-0b38ce93-1f24-429f-a154-4d7bd4a07086/files/no-job/file-0ca7d8bee4ce4b7285e11ba30c7e3711/stream'
>  -> '/tmp/tmps8vw9r7v'
> 
> During handling of the above exception, another exception occurred:
> 
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/test/jobStores/jobStoreTest.py", line 1042, 
> in testEmptyFileStoreIDIsReadable
>     os.unlink(path)
> FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmps8vw9r7v'
> ---------------------------- Captured stdout setup 
> -----------------------------
> 
> 
> [TEST] 
> toil.test.jobStores.jobStoreTest.FileJobStoreTest:testEmptyFileStoreIDIsReadable
>  (Feb 12 2022 22:36:36:419614 PST)
> 
> 
> =========================== short test summary info 
> ============================
> FAILED 
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testEmptyFileStoreIDIsReadable
> ==== 1 failed, 197 passed, 319 skipped, 44 deselected in 772.74s (0:12:52) 
> =====
> E: pybuild pybuild:367: test: plugin custom failed with: exit code=1: 
> HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil python3.10 setup.py develop 
> --user && PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH 
> PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_toil/.local/bin/:$PATH 
> TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.10 -m pytest -vv -W ignore 
> --ignore src/toil/test/lib/aws/test_s3.py --ignore 
> src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore 
> src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py 
> --ignore src/toil/test/src/promisedRequirementTest.py --ignore 
> src/toil/test/lib/test_ec2.py --ignore 
> src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or 
> test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or 
> SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" 
> /<<PKGBUILDDIR>>/src/toil/test
> I: pybuild base:237: HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil 
> python3.9 setup.py develop --user && 
> PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH 
> PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin/:$PATH 
> TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.9 -m pytest -vv -W ignore 
> --ignore src/toil/test/lib/aws/test_s3.py --ignore 
> src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore 
> src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py 
> --ignore src/toil/test/src/promisedRequirementTest.py --ignore 
> src/toil/test/lib/test_ec2.py --ignore 
> src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or 
> test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or 
> SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" 
> /<<PKGBUILDDIR>>/src/toil/test
> /<<PKGBUILDDIR>>/setup.py:14: DeprecationWarning: the imp module is 
> deprecated in favour of importlib; see the module's documentation for 
> alternative uses
>   import imp
> running develop
> /usr/lib/python3/dist-packages/setuptools/command/easy_install.py:158: 
> EasyInstallDeprecationWarning: easy_install command is deprecated. Use build 
> and pip and other standards-based tools.
>   warnings.warn(
> /usr/lib/python3/dist-packages/setuptools/command/install.py:34: 
> SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and 
> pip and other standards-based tools.
>   warnings.warn(
> running egg_info
> writing src/toil.egg-info/PKG-INFO
> writing dependency_links to src/toil.egg-info/dependency_links.txt
> writing entry points to src/toil.egg-info/entry_points.txt
> writing requirements to src/toil.egg-info/requires.txt
> writing top-level names to src/toil.egg-info/top_level.txt
> reading manifest file 'src/toil.egg-info/SOURCES.txt'
> reading manifest template 'MANIFEST.in'
> adding license file 'LICENSE'
> writing manifest file 'src/toil.egg-info/SOURCES.txt'
> running build_ext
> Creating 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/lib/python3.9/site-packages/toil.egg-link
>  (link to src)
> Adding toil 5.6.0 to easy-install.pth file
> Installing _toil_contained_executor script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin
> Installing _toil_mesos_executor script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin
> Installing _toil_worker script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin
> Installing cwltoil script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin
> Installing toil script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin
> Installing toil-cwl-runner script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin
> Installing toil-wdl-runner script to 
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin
> 
> Installed /<<PKGBUILDDIR>>/src
> Processing dependencies for toil==5.6.0
> Searching for requests==2.25.1
> Best match: requests 2.25.1
> Adding requests 2.25.1 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for pytz==2021.3
> Best match: pytz 2021.3
> Adding pytz 2021.3 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for python-dateutil==2.8.1
> Best match: python-dateutil 2.8.1
> Adding python-dateutil 2.8.1 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for psutil==5.9.0
> Best match: psutil 5.9.0
> Adding psutil 5.9.0 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for enlighten==1.7.2
> Best match: enlighten 1.7.2
> Adding enlighten 1.7.2 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for docker==5.0.3
> Best match: docker 5.0.3
> Adding docker 5.0.3 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Searching for dill==0.3.4
> Best match: dill 0.3.4
> Adding dill 0.3.4 to easy-install.pth file
> 
> Using /usr/lib/python3/dist-packages
> Finished processing dependencies for toil==5.6.0
> ============================= test session starts 
> ==============================
> platform linux -- Python 3.9.10, pytest-6.2.5, py-1.10.0, pluggy-0.13.0 -- 
> /usr/bin/python3.9
> cachedir: .pytest_cache
> rootdir: /<<PKGBUILDDIR>>, configfile: setup.cfg
> collecting ... /usr/lib/python3/dist-packages/wdlparse/__init__.py
> collected 561 items / 44 deselected / 517 selected
> 
> src/toil/test/__init__.py::toil.test.make_tests PASSED                   [  
> 0%]
> src/toil/test/__init__.py::toil.test.timeLimit PASSED                    [  
> 0%]
> src/toil/test/batchSystems/test_lsf_helper.py::LSFHelperTest::test_parse_mem_and_cmd_from_output
>  PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_many_all_exist
>  PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_exists
>  PASSED [  0%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_one_not_exists
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_exists
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_sacct_raises_job_not_exists
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_coalesce_job_exit_codes_some_exists
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_all_exist
>  PASSED [  1%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_none_exist
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_many_some_exist
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_exists
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromSacct_one_not_exists
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_all_exist
>  PASSED [  2%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_none_exist
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_many_some_exist
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_exists
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobDetailsFromScontrol_one_not_exists
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_exists
>  PASSED [  3%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_job_not_exists
>  PASSED [  4%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_exists
>  PASSED [  4%]
> src/toil/test/batchSystems/test_slurm.py::SlurmTest::test_getJobExitCode_sacct_raises_job_not_exists
>  PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testBatchCreate 
> PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testChildLoadingEquality
>  PASSED [  4%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testCleanCache 
> SKIPPED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testConfigEquality 
> PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionIdempotence
>  PASSED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testDestructionOfCorruptedJobStore
>  SKIPPED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testEmptyFileStoreIDIsReadable
>  FAILED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testFileDeletion 
> SKIPPED [  5%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testGrowingAndShrinkingJob
>  PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testImportHttpFile 
> PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testInitialState 
> PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobCreation 
> PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobDeletions 
> PASSED [  6%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testJobLoadEquality
>  PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testLargeFile 
> SKIPPED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testMultipartUploads
>  SKIPPED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPartialReadFromStream
>  PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPerJobFiles 
> PASSED [  7%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPersistantFilesToDelete
>  PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testPreserveFileName
>  PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteFileStreamTextMode
>  PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testReadWriteSharedFilesTextMode
>  PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testSharedFiles 
> PASSED [  8%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testStatsAndLogging
>  PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testUpdateBehavior 
> PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testWriteLogFiles 
> PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testZeroLengthFiles
>  PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_does_not_leak_symlinks
>  PASSED [  9%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_jobstore_init_preserves_symlink_path
>  PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py PASSED [ 10%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py PASSED [ 11%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest
>  <- src/toil/test/__init__.py PASSED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testBatchCreate 
> SKIPPED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testChildLoadingEquality
>  SKIPPED [ 12%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testCleanCache 
> SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testConfigEquality
>  SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionIdempotence
>  SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testDestructionOfCorruptedJobStore
>  SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testEmptyFileStoreIDIsReadable
>  SKIPPED [ 13%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testFileDeletion 
> SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testGrowingAndShrinkingJob
>  SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testImportHttpFile
>  SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testInitialState 
> SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobCreation 
> SKIPPED [ 14%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobDeletions 
> SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testJobLoadEquality
>  SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testLargeFile 
> SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testMultipartUploads
>  SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPartialReadFromStream
>  SKIPPED [ 15%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPerJobFiles 
> SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testPersistantFilesToDelete
>  SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteFileStreamTextMode
>  SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testReadWriteSharedFilesTextMode
>  SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testSharedFiles 
> SKIPPED [ 16%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testStatsAndLogging
>  SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testUpdateBehavior
>  SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testWriteLogFiles
>  SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::testZeroLengthFiles
>  SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 17%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 18%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 19%]
> src/toil/test/jobStores/jobStoreTest.py::GoogleJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest
>  <- src/toil/test/__init__.py SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testBatchCreate 
> SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testChildLoadingEquality
>  SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testCleanCache 
> SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testConfigEquality 
> SKIPPED [ 20%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionIdempotence
>  SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testDestructionOfCorruptedJobStore
>  SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testEmptyFileStoreIDIsReadable
>  SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testFileDeletion 
> SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testGrowingAndShrinkingJob
>  SKIPPED [ 21%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testImportHttpFile 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInitialState 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testInlinedFiles 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobCreation 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobDeletions 
> SKIPPED [ 22%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testJobLoadEquality 
> SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testLargeFile 
> SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultiThreadImportFile
>  SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testMultipartUploads
>  SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testOverlargeJob 
> SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPartialReadFromStream
>  SKIPPED [ 23%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPerJobFiles 
> SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testPersistantFilesToDelete
>  SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteFileStreamTextMode
>  SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testReadWriteSharedFilesTextMode
>  SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation
>  SKIPPED [ 24%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testSharedFiles 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testStatsAndLogging 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testUpdateBehavior 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testWriteLogFiles 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::testZeroLengthFiles 
> SKIPPED [ 25%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 26%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 27%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::AWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest
>  <- src/toil/test/__init__.py SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::InvalidAWSJobStoreTest::testInvalidJobStoreName
>  SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testBatchCreate
>  SKIPPED [ 28%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testChildLoadingEquality
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testCleanCache
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testConfigEquality
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testDestructionIdempotence
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testDestructionOfCorruptedJobStore
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testEmptyFileStoreIDIsReadable
>  SKIPPED [ 29%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testEncrypted
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testFileDeletion
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testGrowingAndShrinkingJob
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testImportHttpFile
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInitialState
>  SKIPPED [ 30%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testInlinedFiles
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobCreation
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobDeletions
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testJobLoadEquality
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testLargeFile
>  SKIPPED [ 31%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultiThreadImportFile
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testMultipartUploads
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testOverlargeJob
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPartialReadFromStream
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPerJobFiles
>  SKIPPED [ 32%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testPersistantFilesToDelete
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteFileStreamTextMode
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testReadWriteSharedFilesTextMode
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSDBDomainsDeletedOnFailedJobstoreBucketCreation
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testSharedFiles
>  SKIPPED [ 33%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testStatsAndLogging
>  SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testUpdateBehavior
>  SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testWriteLogFiles
>  SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::testZeroLengthFiles
>  SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 34%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_activated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_one
>  <- src/toil/test/__init__.py SKIPPED [ 35%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_onemib
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsize
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeminusone
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_partsizeplusone
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportExportFile__moveExports_deactivated__otherCls_filejobstoretest__size_zero
>  <- src/toil/test/__init__.py SKIPPED [ 36%]
> src/toil/test/jobStores/jobStoreTest.py::EncryptedAWSJobStoreTest::test_testImportSharedFile__otherCls_filejobstoretest
>  <- src/toil/test/__init__.py SKIPPED [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean SKIPPED     [ 
> 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_FORGO 
> SKIPPED [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_None SKIPPED 
> [ 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_RM SKIPPED [ 
> 37%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CRx_STOP SKIPPED 
> [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_FORGO 
> SKIPPED [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_None SKIPPED 
> [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_RM SKIPPED [ 
> 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_CxD_STOP SKIPPED 
> [ 38%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_FORGO 
> SKIPPED [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_None SKIPPED 
> [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_RM SKIPPED [ 
> 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_Cxx_STOP SKIPPED 
> [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_FORGO 
> SKIPPED [ 39%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_None SKIPPED 
> [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_RM SKIPPED [ 
> 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xRx_STOP SKIPPED 
> [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_FORGO 
> SKIPPED [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_None SKIPPED 
> [ 40%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_RM SKIPPED [ 
> 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxD_STOP SKIPPED 
> [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_FORGO 
> SKIPPED [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_None SKIPPED 
> [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_RM SKIPPED [ 
> 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerClean_xxx_STOP SKIPPED 
> [ 41%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs SKIPPED      [ 
> 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux SKIPPED [ 
> 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Demux_Stream 
> SKIPPED [ 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerLogs_Stream SKIPPED [ 
> 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChain SKIPPED [ 
> 42%]
> src/toil/test/lib/dockerTest.py::DockerTest::testDockerPipeChainErrorDetection
>  SKIPPED [ 43%]
> src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChain 
> SKIPPED [ 43%]
> src/toil/test/lib/dockerTest.py::DockerTest::testNonCachingDockerChainErrorDetection
>  SKIPPED [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_convert PASSED [ 
> 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_hms_duration_to_seconds
>  PASSED [ 43%]
> src/toil/test/lib/test_conversions.py::ConversionTest::test_human2bytes 
> PASSED [ 44%]
> src/toil/test/mesos/MesosDataStructuresTest.py::DataStructuresTest::testJobQueue
>  PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testAddingInitialNode
>  PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testHighTargetTime
>  PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testJobTooLargeForAllNodes
>  PASSED [ 44%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLongRunningJobs
>  PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testLowTargetTime
>  PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPackingOneShape
>  PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testPathologicalCase
>  PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testSorting 
> PASSED [ 45%]
> src/toil/test/provisioners/clusterScalerTest.py::BinPackingTest::testZeroResourceJobs
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testBetaInertia
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMaxNodes
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testMinNodes
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testNoLaunchingIfDeltaAlreadyMet
>  PASSED [ 46%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptableDeficitIsSet
>  PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testPreemptableDeficitResponse
>  PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ClusterScalerTest::testRounding
>  PASSED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScaling
>  SKIPPED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingMultipleNodeTypes
>  SKIPPED [ 47%]
> src/toil/test/provisioners/clusterScalerTest.py::ScalerThreadTest::testClusterScalingWithPreemptableJobs
>  SKIPPED [ 47%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTest::testSpotAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEStaticAutoscaleTest::testSpotAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCEAutoscaleTestMultipleNodeTypes::testAutoScale
>  SKIPPED [ 48%]
> src/toil/test/provisioners/gceProvisionerTest.py::GCERestartTest::testAutoScaledCluster
>  SKIPPED [ 49%]
> src/toil/test/provisioners/provisionerTest.py::ProvisionerTest::test_node_type_parsing
>  PASSED [ 49%]
> src/toil/test/server/serverTest.py::ToilWESServerTest::test_get_service_info 
> SKIPPED [ 49%]
> src/toil/test/server/serverTest.py::ToilWESServerTest::test_run_example_cwl_workflow
>  SKIPPED [ 49%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithConcurrentEncapsulation
>  SKIPPED [ 49%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testDeferralWithFailureAndEncapsulation
>  SKIPPED [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testRestart 
> SKIPPED [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testSplitRootPackages
>  SKIPPED [ 50%]
> src/toil/test/src/autoDeploymentTest.py::AutoDeploymentTest::testUserTypesInJobFunctionArgs
>  SKIPPED [ 50%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointNotRetried 
> PASSED [ 50%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointRetriedOnce
>  SKIPPED [ 51%]
> src/toil/test/src/checkpointTest.py::CheckpointTest::testCheckpointedRestartSucceeds
>  SKIPPED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testBatchSystemCleanupCanHandleWorkerDeaths
>  PASSED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithClassMethod
>  PASSED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithFailures
>  SKIPPED [ 51%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithLambda
>  PASSED [ 52%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testDeferredFunctionRunsWithMethod
>  PASSED [ 52%]
> src/toil/test/src/deferredFunctionTest.py::DeferredFunctionTest::testNewJobsCanHandleOtherJobDeaths
>  SKIPPED [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testApplianceParser 
> SKIPPED [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadGoogleRepo 
> SKIPPED [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepo 
> SKIPPED [ 52%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayRepoNTag 
> SKIPPED [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBadQuayTag SKIPPED 
> [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepo 
> SKIPPED [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testBroadDockerRepoBadTag
>  SKIPPED [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testGoogleRepo SKIPPED 
> [ 53%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testNonexistentRepo 
> SKIPPED [ 54%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testOfficialUbuntuRepo 
> SKIPPED [ 54%]
> src/toil/test/src/dockerCheckTest.py::DockerCheckTest::testToilQuayRepo 
> SKIPPED [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreLogging
>  SKIPPED [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testFileStoreOperations
>  SKIPPED [ 54%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testImportReadFileCompatibility
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testToilIsNotBroken
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions
>  PASSED [ 55%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testAsyncWriteWithCaching
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionFailCase
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionPartialEvict
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testCacheEvictionTotalEvict
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testControlledFailedWorkerRetry
>  SKIPPED [ 56%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testDeleteLocalFile
>  PASSED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testExtremeCacheSetup
>  SKIPPED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreExportFile
>  SKIPPED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreLogging
>  SKIPPED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testFileStoreOperations
>  SKIPPED [ 57%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testImportReadFileCompatibility
>  PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheHitGlobalFile
>  SKIPPED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testMultipleJobsReadSameCacheMissGlobalFile
>  SKIPPED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCachHitFileFromJobStore
>  PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile
>  PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile
>  PASSED [ 58%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReadWriteFileStreamTextMode
>  PASSED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalImmutablyReadFile
>  SKIPPED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testRemoveLocalMutablyReadFile
>  SKIPPED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizes
>  SKIPPED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testReturnFileSizesWithBadWorker
>  SKIPPED [ 59%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testSimultaneousReadsUncachedStream
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testToilIsNotBroken
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteExportFileCompatibility
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteLocalFileToJobStore
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteNonLocalFileToJobStore
>  PASSED [ 60%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithFileJobStore::testWriteReadGlobalFilePermissions
>  PASSED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreLogging
>  SKIPPED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testFileStoreOperations
>  SKIPPED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testImportReadFileCompatibility
>  SKIPPED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode
>  SKIPPED [ 61%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testToilIsNotBroken
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testAsyncWriteWithCaching
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionFailCase
>  SKIPPED [ 62%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionPartialEvict
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testCacheEvictionTotalEvict
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testControlledFailedWorkerRetry
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testDeleteLocalFile
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testExtremeCacheSetup
>  SKIPPED [ 63%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreExportFile
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreLogging
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testFileStoreOperations
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testImportReadFileCompatibility
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheHitGlobalFile
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testMultipleJobsReadSameCacheMissGlobalFile
>  SKIPPED [ 64%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCachHitFileFromJobStore
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReadWriteFileStreamTextMode
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalImmutablyReadFile
>  SKIPPED [ 65%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testRemoveLocalMutablyReadFile
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizes
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testReturnFileSizesWithBadWorker
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testSimultaneousReadsUncachedStream
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testToilIsNotBroken
>  SKIPPED [ 66%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteExportFileCompatibility
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteLocalFileToJobStore
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteNonLocalFileToJobStore
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithAwsJobStore::testWriteReadGlobalFilePermissions
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreLogging
>  SKIPPED [ 67%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testFileStoreOperations
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testImportReadFileCompatibility
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility
>  SKIPPED [ 68%]
> src/toil/test/src/fileStoreTest.py::NonCachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testAsyncWriteWithCaching
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionFailCase
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionPartialEvict
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testCacheEvictionTotalEvict
>  SKIPPED [ 69%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testControlledFailedWorkerRetry
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testDeleteLocalFile
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testExtremeCacheSetup
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreExportFile
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreLogging
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testFileStoreOperations
>  SKIPPED [ 70%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testImportReadFileCompatibility
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheHitGlobalFile
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testMultipleJobsReadSameCacheMissGlobalFile
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCachHitFileFromJobStore
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithCachingReadFile
>  SKIPPED [ 71%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadCacheMissFileFromJobStoreWithoutCachingReadFile
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReadWriteFileStreamTextMode
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalImmutablyReadFile
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testRemoveLocalMutablyReadFile
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizes
>  SKIPPED [ 72%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testReturnFileSizesWithBadWorker
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testSimultaneousReadsUncachedStream
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testToilIsNotBroken
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteExportFileCompatibility
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteLocalFileToJobStore
>  SKIPPED [ 73%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteNonLocalFileToJobStore
>  SKIPPED [ 74%]
> src/toil/test/src/fileStoreTest.py::CachingFileStoreTestWithGoogleJobStore::testWriteReadGlobalFilePermissions
>  SKIPPED [ 74%]
> src/toil/test/src/helloWorldTest.py::HelloWorldTest::testHelloWorld PASSED [ 
> 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_basic_import_export
>  PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_false
>  PASSED [ 74%]
> src/toil/test/src/importExportFileTest.py::ImportExportFileTest::test_import_export_restart_true
>  SKIPPED [ 75%]
> src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescription
>  PASSED [ 75%]
> src/toil/test/src/jobDescriptionTest.py::JobDescriptionTest::testJobDescriptionSequencing
>  PASSED [ 75%]
> src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testAddChildEncapsulate
>  PASSED [ 75%]
> src/toil/test/src/jobEncapsulationTest.py::JobEncapsulationTest::testEncapsulation
>  PASSED [ 75%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testCachingFileStore 
> PASSED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStore 
> PASSED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testJobFileStoreWithBadWorker
>  SKIPPED [ 76%]
> src/toil/test/src/jobFileStoreTest.py::JobFileStoreTest::testNonCachingFileStore
>  PASSED [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testService SKIPPED [ 
> 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceDeadlock 
> SKIPPED [ 76%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceParallelRecursive
>  SKIPPED [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceRecursive 
> SKIPPED [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceSerialization 
> SKIPPED [ 77%]
> src/toil/test/src/jobServiceTest.py::JobServiceTest::testServiceWithCheckpoints
>  SKIPPED [ 77%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testService SKIPPED 
> [ 77%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceDeadlock 
> SKIPPED [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceParallelRecursive
>  SKIPPED [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceRecursive 
> SKIPPED [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceSerialization
>  SKIPPED [ 78%]
> src/toil/test/src/jobServiceTest.py::PerfectServiceTest::testServiceWithCheckpoints
>  SKIPPED [ 78%]
> src/toil/test/src/jobTest.py::JobTest::testDAGConsistency PASSED         [ 
> 79%]
> src/toil/test/src/jobTest.py::JobTest::testDeadlockDetection PASSED      [ 
> 79%]
> src/toil/test/src/jobTest.py::JobTest::testEvaluatingRandomDAG SKIPPED   [ 
> 79%]
> src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexNonRootCase
>  SKIPPED [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testNewCheckpointIsLeafVertexRootCase 
> SKIPPED [ 79%]
> src/toil/test/src/jobTest.py::JobTest::testSiblingDAGConsistency SKIPPED [ 
> 80%]
> src/toil/test/src/jobTest.py::JobTest::testStatic SKIPPED (Skipped b...) [ 
> 80%]
> src/toil/test/src/jobTest.py::JobTest::testStatic2 PASSED                [ 
> 80%]
> src/toil/test/src/jobTest.py::JobTest::testTrivialDAGConsistency SKIPPED [ 
> 80%]
> src/toil/test/src/miscTests.py::MiscTests::testGetSizeOfDirectoryWorks 
> SKIPPED [ 80%]
> src/toil/test/src/miscTests.py::MiscTests::testIDStability PASSED        [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_error PASSED [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_context_ok PASSED [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_install PASSED    [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_atomic_install_dev PASSED [ 
> 81%]
> src/toil/test/src/miscTests.py::MiscTests::test_call_command_err PASSED  [ 
> 82%]
> src/toil/test/src/miscTests.py::MiscTests::test_call_command_ok PASSED   [ 
> 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_nested_panic PASSED      [ 
> 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic PASSED             [ 
> 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic_by_hand PASSED     [ 
> 82%]
> src/toil/test/src/miscTests.py::TestPanic::test_panic_with_secondary PASSED [ 
> 82%]
> src/toil/test/src/promisesTest.py::CachedUnpicklingJobStoreTest::test PASSED 
> [ 83%]
> src/toil/test/src/promisesTest.py::ChainedIndexedPromisesTest::test PASSED [ 
> 83%]
> src/toil/test/src/promisesTest.py::PathIndexingPromiseTest::test PASSED  [ 
> 83%]
> src/toil/test/src/realtimeLoggerTest.py::RealtimeLoggerTest::testRealtimeLogger
>  PASSED [ 83%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testLogToMaster SKIPPED 
> [ 83%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testMultipleLogToMaster 
> SKIPPED [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testRegularLog PASSED [ 
> 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteGzipLogs 
> SKIPPED [ 84%]
> src/toil/test/src/regularLogTest.py::RegularLogTest::testWriteLogs PASSED [ 
> 84%]
> src/toil/test/src/resourceTest.py::ResourceTest::testBuiltIn PASSED      [ 
> 84%]
> src/toil/test/src/resourceTest.py::ResourceTest::testNonPyStandAlone PASSED [ 
> 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testPackage PASSED      [ 
> 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testStandAlone PASSED   [ 
> 85%]
> src/toil/test/src/resourceTest.py::ResourceTest::testStandAloneInPackage 
> PASSED [ 85%]
> src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnFailedParent
>  SKIPPED [ 85%]
> src/toil/test/src/restartDAGTest.py::RestartDAGTest::testRestartedWorkflowSchedulesCorrectJobsOnKilledParent
>  SKIPPED [ 86%]
> src/toil/test/src/resumabilityTest.py::ResumabilityTest::test SKIPPED    [ 
> 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testAlways PASSED [ 
> 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testNever PASSED [ 
> 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnErrorWithError
>  PASSED [ 86%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnErrorWithNoError
>  PASSED [ 87%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnSuccessWithError
>  PASSED [ 87%]
> src/toil/test/src/retainTempDirTest.py::CleanWorkDirTest::testOnSuccessWithSuccess
>  PASSED [ 87%]
> src/toil/test/src/systemTest.py::SystemTest::testAtomicityOfNonEmptyDirectoryRenames
>  PASSED [ 87%]
> src/toil/test/src/threadingTest.py::ThreadingTest::testGlobalMutexOrdering 
> PASSED [ 87%]
> src/toil/test/src/threadingTest.py::ThreadingTest::testLastProcessStanding 
> PASSED [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testContextManger
>  SKIPPED [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testExportAfterFailedExport
>  SKIPPED [ 88%]
> src/toil/test/src/toilContextManagerTest.py::ToilContextManagerTest::testNoContextManger
>  SKIPPED [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClass
>  SKIPPED [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobClassFromMain
>  PASSED [ 88%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunction
>  PASSED [ 89%]
> src/toil/test/src/userDefinedJobArgTypeTest.py::UserDefinedJobArgTypeTest::testJobFunctionFromMain
>  PASSED [ 89%]
> src/toil/test/src/workerTest.py::WorkerTests::testNextChainable PASSED   [ 
> 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testFetchJobStoreFiles
>  PASSED [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testFetchJobStoreFilesWSymlinks
>  PASSED [ 89%]
> src/toil/test/utils/toilDebugTest.py::ToilDebugFileTest::testJobStoreContents 
> SKIPPED [ 90%]
> src/toil/test/utils/toilKillTest.py::ToilKillTest::test_cwl_toil_kill PASSED 
> [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testAWSProvisionerUtils SKIPPED 
> [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetPIDStatus PASSED     [ 
> 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedCWLWF SKIPPED 
> [ 90%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusFailedToilWF PASSED 
> [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testGetStatusSuccessfulCWLWF 
> SKIPPED [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testMultipleJobsPerWorkerStats 
> SKIPPED [ 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testPrintJobLog PASSED      [ 
> 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testRestartAttribute PASSED [ 
> 91%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUnicodeSupport PASSED   [ 
> 92%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsSort SKIPPED (...) [ 
> 92%]
> src/toil/test/utils/utilsTest.py::UtilsTest::testUtilsStatsSort SKIPPED  [ 
> 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Ceil
>  PASSED [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Cross
>  PASSED [ 92%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Floor
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Length
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadBoolean
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadFloat
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadInt
>  PASSED [ 93%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadJson
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadLines
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadMap
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadString
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_ReadTsv
>  PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Sub 
> PASSED [ 94%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Transpose
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteJson
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteLines
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteMap
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_WriteTsv
>  PASSED [ 95%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryFunctionsTest::testFn_Zip 
> PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlLanguageSpecWorkflowsTest::test_type_pair
>  PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlLanguageSpecWorkflowsTest::test_v1_declaration
>  PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_as_map
>  PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_as_pairs
>  PASSED [ 96%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_ceil 
> PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_collect_by_key
>  PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_cross 
> PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_flatten
>  PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_floor 
> PASSED [ 97%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_keys 
> PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_length
>  PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_range 
> PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_read 
> PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_round 
> PASSED [ 98%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_size 
> PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_stdout
>  PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_sub 
> PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_transpose
>  PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_write 
> PASSED [ 99%]
> src/toil/test/wdl/builtinTest.py::WdlStandardLibraryWorkflowsTest::test_zip 
> PASSED [100%]
> 
> =================================== FAILURES 
> ===================================
> _______________ FileJobStoreTest.testEmptyFileStoreIDIsReadable 
> ________________
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/jobStores/fileJobStore.py", line 489, in 
> read_file
>     os.link(jobStoreFilePath, local_path)
> FileExistsError: [Errno 17] File exists: 
> '/<<PKGBUILDDIR>>/jobstore-test-f212efbf-c709-4ed6-b534-de094251853d/files/no-job/file-39f868b60c1143338c59c822538f938f/stream'
>  -> '/tmp/tmpulcxi9rp'
> 
> During handling of the above exception, another exception occurred:
> 
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/test/jobStores/jobStoreTest.py", line 1039, 
> in testEmptyFileStoreIDIsReadable
>     self.jobstore_initialized.read_file(id, path)
>   File "/<<PKGBUILDDIR>>/src/toil/jobStores/fileJobStore.py", line 498, in 
> read_file
>     os.link(jobStoreFilePath, local_path)
> OSError: [Errno 18] Invalid cross-device link: 
> '/<<PKGBUILDDIR>>/jobstore-test-f212efbf-c709-4ed6-b534-de094251853d/files/no-job/file-39f868b60c1143338c59c822538f938f/stream'
>  -> '/tmp/tmpulcxi9rp'
> 
> During handling of the above exception, another exception occurred:
> 
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/src/toil/test/jobStores/jobStoreTest.py", line 1042, 
> in testEmptyFileStoreIDIsReadable
>     os.unlink(path)
> FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpulcxi9rp'
> ---------------------------- Captured stdout setup 
> -----------------------------
> 
> 
> [TEST] 
> toil.test.jobStores.jobStoreTest.FileJobStoreTest:testEmptyFileStoreIDIsReadable
>  (Feb 12 2022 22:49:29:518151 PST)
> 
> 
> =========================== short test summary info 
> ============================
> FAILED 
> src/toil/test/jobStores/jobStoreTest.py::FileJobStoreTest::testEmptyFileStoreIDIsReadable
> ==== 1 failed, 197 passed, 319 skipped, 44 deselected in 773.72s (0:12:53) 
> =====
> E: pybuild pybuild:367: test: plugin custom failed with: exit code=1: 
> HOME=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil python3.9 setup.py develop 
> --user && PYTHONPATH=/<<PKGBUILDDIR>>/src:$PYTHONPATH 
> PATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_toil/.local/bin/:$PATH 
> TOIL_TEST_QUICK=True TOIL_SKIP_DOCKER=True python3.9 -m pytest -vv -W ignore 
> --ignore src/toil/test/lib/aws/test_s3.py --ignore 
> src/toil/test/provisioners/aws/awsProvisionerTest.py --ignore 
> src/toil/test/wdl/toilwdlTest.py --ignore src/toil/test/cwl/cwlTest.py 
> --ignore src/toil/test/src/promisedRequirementTest.py --ignore 
> src/toil/test/lib/test_ec2.py --ignore 
> src/toil/test/batchSystems/batchSystemTest.py -k "not (test_bioconda or 
> test_run_conformance or testImportFtpFile or ToilWdlIntegrationTest or 
> SortTest or testCwlexample or testVirtualEnv or ToilDocumentationTest)" 
> /<<PKGBUILDDIR>>/src/toil/test
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 
> 3.9" returned exit code 13


The full build log is available from:
http://qa-logs.debian.net/2022/02/12/toil_5.6.0-2_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

--- End Message ---

--- Begin Message ---

Source: toil
Source-Version: 5.6.0-3
Done: Nilesh Patra <nil...@debian.org>

We believe that the bug you reported is fixed in the latest version of
toil, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1005...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated toil package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 10 Mar 2022 17:55:25 +0530
Source: toil
Architecture: source
Version: 5.6.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 1005479
Changes:
 toil (5.6.0-3) unstable; urgency=medium
 .
   * Team Upload.
   * Add patch to fix FTBFS with jobStores
     tests (Closes: #1005479)
Checksums-Sha1:
 869947dbbee9ca3e8bd562258ad9d20c7c5a8595 2502 toil_5.6.0-3.dsc
 7de7a6a9710c810adf614983b2aae5f70983c1f9 12396 toil_5.6.0-3.debian.tar.xz
 4e048996c90b9ecd8fc208ccd4e688a98edd55a8 10853 toil_5.6.0-3_amd64.buildinfo
Checksums-Sha256:
 0ca4e1503e79f81e1e5ec480f3c6918ddf947a41ce71c7f114a5af65a030f78b 2502 
toil_5.6.0-3.dsc
 ea0812301774332d9f110bdaf6a08bef6d26fd443d21d5e150c26b7c5869bc16 12396 
toil_5.6.0-3.debian.tar.xz
 ac156a3eeae78c00d796a23ea449d32f0323531200b87ba37f23117ab735817e 10853 
toil_5.6.0-3_amd64.buildinfo
Files:
 8f41f51a92adcff4bb3b5015cfee3231 2502 net optional toil_5.6.0-3.dsc
 d9407d6ed710aa8e64da0224a1a1a9f4 12396 net optional toil_5.6.0-3.debian.tar.xz
 dffea275dea29f13ab0814b6d4983afd 10853 net optional 
toil_5.6.0-3_amd64.buildinfo

-----BEGIN PGP SIGNATURE-----
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=xhkU
-----END PGP SIGNATURE-----

--- End Message ---