Your message dated Sat, 22 Jan 2022 23:04:05 +0000 with message-id <e1nbpqt-0001or...@fasolo.debian.org> and subject line Bug#984063: fixed in insighttoolkit4 4.13.3withdata-dfsg2-1 has caused the Debian Bug report #984063, regarding insighttoolkit4: ftbfs with GCC-11 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 984063: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984063 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:insighttoolkit4 Version: 4.13.3withdata-dfsg1-4 Severity: normal Tags: sid bookworm User: debian-...@lists.debian.org Usertags: ftbfs-gcc-11 [This bug is not targeted to the upcoming bullseye release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://people.debian.org/~doko/logs/20210228/filtered/gcc11/insighttoolkit4_4.13.3withdata-dfsg1-4_unstable_gcc11.log The last lines of the build log are at the end of this report. To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-11/porting_to.html GCC 11 defaults to the GNU++17 standard. If your package installs header files in /usr/include, please don't work around C++17 issues by choosing a lower C++ standard for the package build, but fix these issues to build with the C++17 standard. [...] 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_vector.h:556:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 556 | VCL_TEMPLATE_EXPORT template <class T> VNL_TEMPLATE_EXPORT std::istream& operator>>(std::istream &, vnl_vector<T> &); | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_vector_ref.h:26:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 26 | VCL_TEMPLATE_EXPORT template <class T> | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_matrix.h:56:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 56 | VCL_TEMPLATE_EXPORT template <class T> class vnl_vector; | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_matrix.h:57:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 57 | VCL_TEMPLATE_EXPORT template <class T> class vnl_matrix; | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_vector_fixed.h:43:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 43 | VCL_TEMPLATE_EXPORT template <class T, unsigned int n> class vnl_vector_fixed; | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_vector_fixed.h:44:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 44 | VCL_TEMPLATE_EXPORT template <class T, unsigned int num_rows, unsigned int num_cols> class vnl_matrix_fixed; | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_matrix_fixed.h:42:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 42 | VCL_TEMPLATE_EXPORT template <class T, unsigned int num_rows, unsigned int num_cols> class vnl_matrix_fixed; | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_diag_matrix.h:40:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 40 | VCL_TEMPLATE_EXPORT template <class T> | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/vnl_svd.h:63:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 63 | VCL_TEMPLATE_EXPORT template <class T> | ^~~~~~~~~~~~~~~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30: warning: keyword ‘export’ is deprecated, and is ignored 114 | # define VCL_TEMPLATE_EXPORT export | ^~~~~~ /<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/vnl_svd.h:206:1: note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’ 206 | VCL_TEMPLATE_EXPORT template <class T> | ^~~~~~~~~~~~~~~~~~~ [ 53%] Linking CXX executable ../../../../bin/ITKLevelSetsv4TestDriver cd /<<PKGBUILDDIR>>/BUILD/Modules/Segmentation/LevelSetsv4/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/ITKLevelSetsv4TestDriver.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/nifti -g1 -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual -Wstrict-null-sentinel -fuse-ld=gold -Wl,-z,relro -rdynamic -fPIE -pie CMakeFiles/ITKLevelSetsv4TestDriver.dir/ITKLevelSetsv4TestDriver.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetDenseImageTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkWhitakerSparseLevelSetImageTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkShiSparseLevelSetImageTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMalcolmSparseLevelSetImageTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkBinaryImageToWhitakerSparseLevelSetAdaptorTest.cxx.o CMakeFiles/ITKLevelSetsv4TestD river.dir/itkBinaryImageToMalcolmSparseLevelSetAdaptorTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkBinaryImageToShiSparseLevelSetAdaptorTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationChanAndVeseExternalTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationChanAndVeseInternalTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationCurvatureTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationLaplacianTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationPropagationTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationBinaryMaskTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationOverlapPenaltyTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationRegionTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationTermBaseTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationTermContainerTe st.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetDomainPartitionBaseTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetDomainPartitionImageTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetDomainPartitionImageWithKdTreeTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetDomainMapImageFilterTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkDenseLevelSetContainerTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSparseLevelSetContainerTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetDenseImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetDenseAdvectionImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetWhitakerImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetMalcolmImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetShiImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetWhitakerImage2DWithCurvatureT est.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetWhitakerImage2DWithLaplacianTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetWhitakerImage2DWithPropagationTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkTwoLevelSetDenseImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkTwoLevelSetWhitakerImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkTwoLevelSetMalcolmImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkTwoLevelSetShiImage2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetDenseImageTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetChanAndVeseInternalTermTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetEvolutionTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetDenseImageSubset2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetWhitakerImageSubset2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetShiImageSu bset2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetMalcolmImageSubset2DTest.cxx.o CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEvolutionNumberOfIterationsStoppingCriterionTest.cxx.o -o ../../../../bin/ITKLevelSetsv4TestDriver ../../../../lib/libITKQuadEdgeMesh-4.13.so.1 ../../../../lib/libITKLabelMap-4.13.so.1 ../../../../lib/libITKStatistics-4.13.so.1 ../../../../lib/libITKSpatialObjects-4.13.so.1 ../../../../lib/libITKPath-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 ../../../../lib/libITKIOBMP-4.13.so.1 ../../../../lib/libITKIOGDCM-4.13.so.1 ../../../../lib/libITKIOGIPL-4.13.so.1 ../../../../lib/libITKIOJPEG-4.13.so.1 ../../../../lib/libITKIOMeta-4.13.so.1 ../../../../lib/libITKIONIFTI-4.13.so.1 ../../../../lib/libITKIONRRD-4.13.so.1 ../../../../lib/libITKIOPNG-4.13.so.1 ../../../../lib/libITKIOTIFF-4.13.so.1 ../../../../lib/libITKIOVTK-4.13.so.1 ../../../../lib/libITKMesh-4.13.s o.1 ../../../../lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 ../../../../lib/libITKMetaIO-4.13.so.1 ../../../../lib/libITKTransform-4.13.so.1 -lz ../../../../lib/libITKIOImageBase-4.13.so.1 ../../../../lib/libITKCommon-4.13.so.1 ../../../../lib/libitksys-4.13.so.1 ../../../../lib/libITKVNLInstantiation-4.13.so.1 ../../../../lib/libitkvnl_algo-4.13.so.1 ../../../../lib/libitkvnl-4.13.so.1 ../../../../lib/libitkv3p_netlib-4.13.so.1 ../../../../lib/libitknetlib-4.13.so.1 ../../../../lib/libitkvcl-4.13.so.1 -lm -lpthread -lm -ldl -Wl,-rpath-link,/<<PKGBUILDDIR>>/BUILD/lib make[3]: Leaving directory '/<<PKGBUILDDIR>>/BUILD' [ 53%] Built target ITKLevelSetsv4TestDriver make[2]: Leaving directory '/<<PKGBUILDDIR>>/BUILD' make[1]: *** [Makefile:185: all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>/BUILD' dh_auto_build: error: cd BUILD && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:84: build] Error 25 dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--- End Message ---
--- Begin Message ---Source: insighttoolkit4 Source-Version: 4.13.3withdata-dfsg2-1 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of insighttoolkit4, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 984...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated insighttoolkit4 package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 22 Jan 2022 22:13:09 +0100 Source: insighttoolkit4 Architecture: source Version: 4.13.3withdata-dfsg2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 984063 Changes: insighttoolkit4 (4.13.3withdata-dfsg2-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * Add NOTICE file to docs . [ Étienne Mollier ] * Add d/gbp.conf to handle the legacy ITK4 in a separate VCS branches. * Add gcc11.patch, fixing ftbfs. (Closes: #984063) * Rewrapped the package to include the embedded TIFF source. * d/rules: use embedded TIFF to address test failures with later versions. Embedding is considered a lesser harm as reverse dependencies and users should be migrating to ITK5 from now on. (See: #984063) * Standards-Version: 4.6.0 (routine-update) * Rewrapped control file (cme fix dpkg) * Remove trailing whitespace in debian/copyright (routine-update) * Rules-Requires-Root: no (routine-update) * Replace spaces in short license names with dashes. * d/control: add myself to uploaders. Checksums-Sha1: 9290f0b7c5281540faadf4ce3f4ba8087eef4643 2710 insighttoolkit4_4.13.3withdata-dfsg2-1.dsc b06b4998e017c29cf5107874a51fd80882c2ab7a 300917558 insighttoolkit4_4.13.3withdata-dfsg2.orig.tar.gz 37389d1c6209ba8d65c12bd9532afff91bfdeda1 28456 insighttoolkit4_4.13.3withdata-dfsg2-1.debian.tar.xz dc9804bac8ef2826a072772386fbbbbb608b6fdf 11612 insighttoolkit4_4.13.3withdata-dfsg2-1_amd64.buildinfo Checksums-Sha256: 8cb80c2816f34c0c9f41ca35a60b1837cf289833d06e80778593490677cab538 2710 insighttoolkit4_4.13.3withdata-dfsg2-1.dsc b4a1647c0402c93e111171be7457e4df756992b3438cea1abaeeadd4f50fb9da 300917558 insighttoolkit4_4.13.3withdata-dfsg2.orig.tar.gz 81c4d73ae6cba3884569f1fa2f23526ae174e13baf21619522b7d59fa04c8858 28456 insighttoolkit4_4.13.3withdata-dfsg2-1.debian.tar.xz 5030b2948ca182670fe14c0dcecfda1e7e992499780b76b3f3e89b2ff8417ae7 11612 insighttoolkit4_4.13.3withdata-dfsg2-1_amd64.buildinfo Files: 7bb5ce1ea137b8dd9825272c8fca05fe 2710 science optional insighttoolkit4_4.13.3withdata-dfsg2-1.dsc 97b360992f59739434531485b03f7ec8 300917558 science optional insighttoolkit4_4.13.3withdata-dfsg2.orig.tar.gz ceccf0dd41acfe4368cde86fbff05d17 28456 science optional insighttoolkit4_4.13.3withdata-dfsg2-1.debian.tar.xz 3b303c05e98a4500b118e9825bb533c0 11612 science optional insighttoolkit4_4.13.3withdata-dfsg2-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmHsiPcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp3HxAAiLO9zW1QvpI9CcjH6DlS14gNywr/ 8AcBCTmL36pMuUR/+OpscMdn9tZrqcm7cN6i2gSNjnxmlOpRqMZjt6RUWGao1eSV OTXXYrBpddnhnbzUQM5UZvazQqfsZGh0/+gnnLfEEtj2JuBDI+yCl8N78+iJjoAP KMx2kVvqKW8Ab5/tlLjv8O17yK7PmuICZiSixgbz4VIi2SkSG36V41TTZTflu7FE sJPvQNFLfuFO+j5xGCSuZY15zMNOuY2zfaJJxH7hSd4hL7iPAVu6DenvX4rKZczL 080gOZlg+QkLlO8ysnSKqH8/RlghfQ70iNmZmjZZKGT+GEZmK0oov+luKVWFMNgK kq5O0eHqepUB6TmIrgLwoajkyNzHM2ngbG2SDFFcvFqJZSMHnX/tK639Xl55vTxt LgAGSr11OVypK9aWVWBa95hJfvBh8VTPkIeqP528N35dnTBjqxG+/gFV0tD3DftJ EWMBkYQQIP+CrALzJDev9MJD04cECI7SlVMH+d1PAHZTgoW3GVAiw7Xch+oNqAip ug/KeiaAjrS10WoXwmWR2+SlT7Ya2RWu+sUD5ybUp2IJFsiFxFDs1aX5P6SVAFwP PIjxFxqtgfqIRvoKk+/lyglG/856pLjd2NegG1hTHI7TXetUDnp9xvlIaB9A7yEq XNeoxE+MUfZoi7o= =Sxu5 -----END PGP SIGNATURE-----
--- End Message ---
