Your message dated Mon, 10 Jan 2022 16:58:42 +0100
with message-id <ydxxsolwqohk8...@an3as.eu>
and subject line Closing bug (Was: Bug#984063: itk libtiff test issues (Was:
Bug#984063))
has caused the Debian Bug report #984063,
regarding insighttoolkit4: ftbfs with GCC-11
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
984063: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984063
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:insighttoolkit4
Version: 4.13.3withdata-dfsg1-4
Severity: normal
Tags: sid bookworm
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-11
[This bug is not targeted to the upcoming bullseye release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The
severity of this report will be raised before the bookworm release,
so nothing has to be done for the bullseye release.
The full build log can be found at:
http://people.debian.org/~doko/logs/20210228/filtered/gcc11/insighttoolkit4_4.13.3withdata-dfsg1-4_unstable_gcc11.log
The last lines of the build log are at the end of this report.
To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-11/porting_to.html
GCC 11 defaults to the GNU++17 standard. If your package installs
header files in /usr/include, please don't work around C++17 issues
by choosing a lower C++ standard for the package build, but fix these
issues to build with the C++17 standard.
[...]
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_vector.h:556:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
556 | VCL_TEMPLATE_EXPORT template <class T> VNL_TEMPLATE_EXPORT
std::istream& operator>>(std::istream &, vnl_vector<T> &);
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_vector_ref.h:26:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
26 | VCL_TEMPLATE_EXPORT template <class T>
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_matrix.h:56:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
56 | VCL_TEMPLATE_EXPORT template <class T> class vnl_vector;
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_matrix.h:57:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
57 | VCL_TEMPLATE_EXPORT template <class T> class vnl_matrix;
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_vector_fixed.h:43:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
43 | VCL_TEMPLATE_EXPORT template <class T, unsigned int n> class
vnl_vector_fixed;
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_vector_fixed.h:44:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
44 | VCL_TEMPLATE_EXPORT template <class T, unsigned int num_rows, unsigned
int num_cols> class vnl_matrix_fixed;
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_matrix_fixed.h:42:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
42 | VCL_TEMPLATE_EXPORT template <class T, unsigned int num_rows, unsigned
int num_cols> class vnl_matrix_fixed;
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/vnl_diag_matrix.h:40:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
40 | VCL_TEMPLATE_EXPORT template <class T>
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/vnl_svd.h:63:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
63 | VCL_TEMPLATE_EXPORT template <class T>
| ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/vcl/vcl_compiler.h:114:30:
warning: keyword ‘export’ is deprecated, and is ignored
114 | # define VCL_TEMPLATE_EXPORT export
| ^~~~~~
/<<PKGBUILDDIR>>/Modules/ThirdParty/VNL/src/vxl/core/vnl/algo/vnl_svd.h:206:1:
note: in expansion of macro ‘VCL_TEMPLATE_EXPORT’
206 | VCL_TEMPLATE_EXPORT template <class T>
| ^~~~~~~~~~~~~~~~~~~
[ 53%] Linking CXX executable ../../../../bin/ITKLevelSetsv4TestDriver
cd /<<PKGBUILDDIR>>/BUILD/Modules/Segmentation/LevelSetsv4/test &&
/usr/bin/cmake -E cmake_link_script
CMakeFiles/ITKLevelSetsv4TestDriver.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -I/usr/include/nifti -g1 -Wall -Wcast-align
-Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral
-Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time
-Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetDenseImageTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkWhitakerSparseLevelSetImageTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkShiSparseLevelSetImageTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMalcolmSparseLevelSetImageTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkBinaryImageToWhitakerSparseLevelSetAdaptorTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestD
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkBinaryImageToShiSparseLevelSetAdaptorTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationChanAndVeseExternalTermTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationChanAndVeseInternalTermTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationCurvatureTermTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationLaplacianTermTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationPropagationTermTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationBinaryMaskTermTest.cxx.o
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEquationTermContainerTe
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetDomainMapImageFilterTest.cxx.o
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSparseLevelSetContainerTest.cxx.o
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetDenseAdvectionImage2DTest.cxx.o
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetMalcolmImage2DTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetShiImage2DTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetWhitakerImage2DWithCurvatureT
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkSingleLevelSetWhitakerImage2DWithLaplacianTest.cxx.o
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkTwoLevelSetMalcolmImage2DTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkTwoLevelSetShiImage2DTest.cxx.o
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetChanAndVeseInternalTermTest.cxx.o
CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetEvolutionTest.cxx.o
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkMultiLevelSetShiImageSu
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CMakeFiles/ITKLevelSetsv4TestDriver.dir/itkLevelSetEvolutionNumberOfIterationsStoppingCriterionTest.cxx.o
-o ../../../../bin/ITKLevelSetsv4TestDriver
../../../../lib/libITKQuadEdgeMesh-4.13.so.1
../../../../lib/libITKLabelMap-4.13.so.1
../../../../lib/libITKStatistics-4.13.so.1
../../../../lib/libITKSpatialObjects-4.13.so.1
../../../../lib/libITKPath-4.13.so.1
/usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1
/usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1
../../../../lib/libITKIOBMP-4.13.so.1 ../../../../lib/libITKIOGDCM-4.13.so.1
../../../../lib/libITKIOGIPL-4.13.so.1 ../../../../lib/libITKIOJPEG-4.13.so.1
../../../../lib/libITKIOMeta-4.13.so.1 ../../../../lib/libITKIONIFTI-4.13.so.1
../../../../lib/libITKIONRRD-4.13.so.1 ../../../../lib/libITKIOPNG-4.13.so.1
../../../../lib/libITKIOTIFF-4.13.so.1 ../../../../lib/libITKIOVTK-4.13.so.1
../../../../lib/libITKMesh-4.13.s
o.1 ../../../../lib/libitkNetlibSlatec-4.13.so.1
/usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8
/usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8
/usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8
/usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8
/usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8
../../../../lib/libITKMetaIO-4.13.so.1
../../../../lib/libITKTransform-4.13.so.1 -lz
../../../../lib/libITKIOImageBase-4.13.so.1
../../../../lib/libITKCommon-4.13.so.1 ../../../../lib/libitksys-4.13.so.1
../../../../lib/libITKVNLInstantiation-4.13.so.1
../../../../lib/libitkvnl_algo-4.13.so.1 ../../../../lib/libitkvnl-4.13.so.1
../../../../lib/libitkv3p_netlib-4.13.so.1
../../../../lib/libitknetlib-4.13.so.1 ../../../../lib/libitkvcl-4.13.so.1 -lm
-lpthread -lm -ldl -Wl,-rpath-link,/<<PKGBUILDDIR>>/BUILD/lib
make[3]: Leaving directory '/<<PKGBUILDDIR>>/BUILD'
[ 53%] Built target ITKLevelSetsv4TestDriver
make[2]: Leaving directory '/<<PKGBUILDDIR>>/BUILD'
make[1]: *** [Makefile:185: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/BUILD'
dh_auto_build: error: cd BUILD && make -j4 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make: *** [debian/rules:84: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Am Mon, Jan 10, 2022 at 05:25:59PM +0200 schrieb Adrian Bunk:
> On Sat, Dec 11, 2021 at 04:02:09PM +0100, Étienne Mollier wrote:
> > Hi there,
> >
> > About the build error I caught with itk4 on <valarray>, this
> > looks to be caused by a gcc bug in the headers files [1],
> > causing failures to build source code including <valarray> with
> > clang, compiler which is in use through castxml, which in turn
> > is used for constructing the wrapper ITKCommonBase. itk5 dsc is
> > not affected as wrappers are not built anymore on its side, so
> > disabling wrappers for itk4 too might be a viable option while
> > #1000398 is being worked on (to at least reproduce the tiff test
> > failures). The build error may otherwise solve by itself with
> > an upcoming gcc version.
> >
> > [1]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000398
> >...
>
> This bug has been fixed in the meantime.
>
> > Kind Regards,
>
> cu
> Adrian
>
>
--
http://fam-tille.de
--- End Message ---
