Your message dated Fri, 31 Dec 2021 12:18:55 +0000 with message-id <e1n3gs3-00079f...@fasolo.debian.org> and subject line Bug#999514: fixed in openstructure 2.2.0-9 has caused the Debian Bug report #999514, regarding openstructure: FTBFS with matplotlib 3.5 (in experimental): dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 check ARGS\+=--verbose ARGS\+=-j4 returned exit code 2 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 999514: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=999514 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: openstructure Version: 2.2.0-8 Severity: important Justification: FTBFS Tags: bookworm sid ftbfs User: lu...@debian.org Usertags: ftbfs-matplotlib35 Hi, During a rebuild of all packages in sid, your package failed to build on amd64, using matplotlib 3.5 currently in experimental. This version will soon be uploaded to unstable. If you have questions about this, please contact Sandro Tosi <mo...@debian.org>. Relevant part (hopefully): > make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > [ 97%] running checks test_naccess.py > cd /<<PKGBUILDDIR>>/modules/bindings/tests && sh -c > "PYTHONPATH=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ > /usr/bin/python3.9 /<<PKGBUILDDIR>>/modules/bindings/tests/test_naccess.py" > /usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file > <_io.BufferedReader name='testfiles/roc-same-val-out.png'> > method() > ResourceWarning: Enable tracemalloc to get the object allocation traceback > ................./<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ost/table.py:2186: > DeprecationWarning: scipy.isnan is deprecated and will be removed in SciPy > 2.0.0, use numpy.isnan instead > if scipy.isnan(correl): > ......................... > ====================================================================== > ERROR: testPlotLogROC (__main__.TestTable) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/<<PKGBUILDDIR>>/modules/base/tests/test_table.py", line 1309, in > testPlotLogROC > pl = tab.PlotLogROC(score_col='score', score_dir='+', > File > "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib/python3.9/dist-packages/ost/table.py", > line 2963, in PlotLogROC > plt.xscale('log', basex=10) > File "/usr/lib/python3/dist-packages/matplotlib/pyplot.py", line 3045, in > xscale > return gca().set_xscale(value, **kwargs) > File "/usr/lib/python3/dist-packages/matplotlib/axes/_base.py", line 3773, > in set_xscale > ax.xaxis._set_scale(value, **kwargs) > File "/usr/lib/python3/dist-packages/matplotlib/axis.py", line 761, in > _set_scale > self._scale = mscale.scale_factory(value, self, **kwargs) > File "/usr/lib/python3/dist-packages/matplotlib/scale.py", line 597, in > scale_factory > return scale_cls(axis, **kwargs) > TypeError: __init__() got an unexpected keyword argument 'basex' > > ---------------------------------------------------------------------- > Ran 83 tests in 1.526s > > FAILED (errors=1) > Could not find NACCESS, could not test binding... > make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > make[4]: *** > [modules/base/tests/CMakeFiles/test_table.py_run.dir/build.make:74: > modules/base/tests/CMakeFiles/test_table.py_run] Error 1 > make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > make[3]: *** [CMakeFiles/Makefile2:2039: > modules/base/tests/CMakeFiles/test_table.py_run.dir/all] Error 2 > make[3]: *** Waiting for unfinished jobs.... > [ 97%] Built target test_naccess.py_run > [ 97%] Building CXX object > modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -MF > CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o.d -o > CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c > /<<PKGBUILDDIR>>/modules/io/tests/test_mmcif_reader.cc > [ 97%] Building CXX object > modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -MF > CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o.d -o > CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -c > /<<PKGBUILDDIR>>/modules/io/tests/test_mmcif_info.cc > [ 97%] Building CXX object > modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -MF > CMakeFiles/ost_io_tests.dir/test_io_img.cc.o.d -o > CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c > /<<PKGBUILDDIR>>/modules/io/tests/test_io_img.cc > [ 97%] Building CXX object > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o -MF > CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o.d -o > CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o -c > /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_block.cc > [ 97%] Building CXX object > modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -MF > CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o.d -o > CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c > /<<PKGBUILDDIR>>/modules/io/tests/test_exceptions.cc > [ 97%] Building CXX object > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o > -MF CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o.d -o > CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o -c > /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_block_modifiers.cc > [ 98%] Building CXX object > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -MF > CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o.d -o > CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -c > /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_topology.cc > [ 98%] Building CXX object > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -MF > CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o.d -o > CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -c > /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_forcefield.cc > [ 98%] Building CXX object > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o -MF > CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o.d -o > CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o -c > /<<PKGBUILDDIR>>/modules/mol/mm/tests/test_simulation.cc > [ 98%] Linking CXX executable ../../../tests/ost_io_tests > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/io/tests && /usr/bin/cmake > -E cmake_link_script CMakeFiles/ost_io_tests.dir/link.txt --verbose=1 > /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro > CMakeFiles/ost_io_tests.dir/test_clustal.cc.o > CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o > CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o > CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o > CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o > CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o > CMakeFiles/ost_io_tests.dir/test_pir.cc.o > CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o > CMakeFiles/ost_io_tests.dir/tests.cc.o > CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o > CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o > CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o > CMakeFiles/ost_io_tests.dir/test_io_img.cc.o > CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -o > ../../../tests/ost_io_tests > -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib > -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib > /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so > ../../../stage/lib/libost_io.so.2.2.0 > ../../../stage/lib/libost_mol_alg.so.2.2.0 > ../../../stage/lib/libost_conop.so.2.2.0 > ../../../stage/lib/libost_db.so.2.2.0 /usr/lib/x86_64-linux-gnu/libsqlite3.so > /usr/lib/x86_64-linux-gnu/libboost_program_options.so > /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread > /usr/lib/x86_64-linux-gnu/libboost_chrono.so > /usr/lib/x86_64-linux-gnu/libboost_date_time.so > /usr/lib/x86_64-linux-gnu/libboost_atomic.so > ../../../stage/lib/libost_seq_alg.so.2.2.0 > ../../../stage/lib/libost_seq.so.2.2.0 ../../../stage/lib/libost_mol.so.2.2.0 > ../../../stage/lib/libost_img_alg.so.2.2.0 > ../../../stage/lib/libost_img.so.2.2.0 > ../../../stage/lib/libost_info.so.2.2.0 > ../../../stage/lib/libost_base.so.2.2.0 > ../../../stage/lib/libost_geom.so.2.2.0 > /usr/lib/x86_64-linux-gnu/libboost_filesystem.so > /usr/lib/x86_64-linux-gnu/libboost_system.so > /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 > /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 > /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 > /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 > /usr/lib/x86_64-linux-gnu/libfftw3f.so > /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so > /usr/lib/x86_64-linux-gnu/libboost_iostreams.so > /usr/lib/x86_64-linux-gnu/libboost_regex.so > /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so > /usr/lib/x86_64-linux-gnu/libz.so > make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > [ 98%] Built target ost_io_tests > [ 98%] Building CXX object > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ > -DQT_CORE_LIB -DQT_GUI_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB > -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 > -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem > /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem > /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem > /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem > /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem > /usr/include/x86_64-linux-gnu/qt5/QtWidgets -g -O2 > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes > -g -fPIC -MD -MT > modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -MF > CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o.d -o > CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -c > /<<PKGBUILDDIR>>/modules/mol/mm/tests/tests.cc > [ 98%] Linking CXX executable ../../../../tests/ost_mol_mm_tests > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/modules/mol/mm/tests && > /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_mm_tests.dir/link.txt > --verbose=1 > /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -g -Wl,-z,relro > CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o > CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o > CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o > CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o > CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o > CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o > CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o -o > ../../../../tests/ost_mol_mm_tests > -L/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib > -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/stage/lib > /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so > ../../../../stage/lib/libost_mol_mm.so.2.2.0 > ../../../../stage/lib/libost_io.so.2.2.0 > ../../../../stage/lib/libost_mol_alg.so.2.2.0 > /usr/lib/x86_64-linux-gnu/libboost_program_options.so > ../../../../stage/lib/libost_conop.so.2.2.0 > ../../../../stage/lib/libost_db.so.2.2.0 > /usr/lib/x86_64-linux-gnu/libsqlite3.so > /usr/lib/x86_64-linux-gnu/libboost_thread.so -lpthread > /usr/lib/x86_64-linux-gnu/libboost_chrono.so > /usr/lib/x86_64-linux-gnu/libboost_date_time.so > /usr/lib/x86_64-linux-gnu/libboost_atomic.so > ../../../../stage/lib/libost_seq_alg.so.2.2.0 > ../../../../stage/lib/libost_seq.so.2.2.0 > ../../../../stage/lib/libost_mol.so.2.2.0 > ../../../../stage/lib/libost_img_alg.so.2.2.0 > /usr/lib/x86_64-linux-gnu/libfftw3f.so > /usr/lib/x86_64-linux-gnu/libfftw3f_threads.so > /usr/lib/x86_64-linux-gnu/libboost_iostreams.so > /usr/lib/x86_64-linux-gnu/libtiff.so /usr/lib/x86_64-linux-gnu/libpng.so > /usr/lib/x86_64-linux-gnu/libz.so ../../../../stage/lib/libost_img.so.2.2.0 > ../../../../stage/lib/libost_info.so.2.2.0 > ../../../../stage/lib/libost_base.so.2.2.0 > ../../../../stage/lib/libost_geom.so.2.2.0 > /usr/lib/x86_64-linux-gnu/libboost_filesystem.so > /usr/lib/x86_64-linux-gnu/libboost_system.so > /usr/lib/x86_64-linux-gnu/libboost_regex.so > /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.2 > /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.2 > /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.2 > /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.2 > /usr/lib/x86_64-linux-gnu/libOpenMM.so > make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > [ 98%] Built target ost_mol_mm_tests > make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > make[2]: *** [CMakeFiles/Makefile2:1723: CMakeFiles/check.dir/rule] Error 2 > make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > make[1]: *** [Makefile:205: check] Error 2 > make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' > dh_auto_test: error: cd obj-x86_64-linux-gnu && make -j4 check > ARGS\+=--verbose ARGS\+=-j4 returned exit code 2 The full build log is available from: http://qa-logs.debian.net/http://qa-logs.debian.net/2021/11/numpy-matplotlib/matplotlib-exp/openstructure_2.2.0-8_unstable_matplotlib-exp.log If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---Source: openstructure Source-Version: 2.2.0-9 Done: Andrius Merkys <mer...@debian.org> We believe that the bug you reported is fixed in the latest version of openstructure, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 999...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andrius Merkys <mer...@debian.org> (supplier of updated openstructure package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 31 Dec 2021 06:57:26 -0500 Source: openstructure Architecture: source Version: 2.2.0-9 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Andrius Merkys <mer...@debian.org> Closes: 999514 Changes: openstructure (2.2.0-9) unstable; urgency=medium . * Fixing incompatibility with matplotlib 3.5 (Closes: #999514) Checksums-Sha1: 1416bbae10124ec4ade8e62294ee471b146fcb63 4532 openstructure_2.2.0-9.dsc 5ea2c6a36b87f1b0b8469b4e3485718ae7909c66 14072 openstructure_2.2.0-9.debian.tar.xz a3cdf8022d0f042af5bd8f3ed3bd9908db11a6fd 19508 openstructure_2.2.0-9_source.buildinfo Checksums-Sha256: 866515ecacdb1809f7f9bec4195034dd1892e771dfecf11739c595883d3da34b 4532 openstructure_2.2.0-9.dsc 6c28d23b8745159aff74ac7f4c560aa0e2026d7405d3abd8f583f8d3e782def8 14072 openstructure_2.2.0-9.debian.tar.xz 1a5011c8eea2636b633e074e8ef2d5bd523feac5964dcca2381eb7336273be86 19508 openstructure_2.2.0-9_source.buildinfo Files: 3c08e119efb902ef26b4ad8bf1ea2362 4532 science optional openstructure_2.2.0-9.dsc ac5c50c157509fcea1308719d977b5c0 14072 science optional openstructure_2.2.0-9.debian.tar.xz 89f8ff69d999e4eb3a3d1ffce279b386 19508 science optional openstructure_2.2.0-9_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmHO8R8SHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHI+YP/1CAEU99iRKJ/oq0H84+kaJ6iNWEsWiN HfL98vbA0B2w73QgfpRd3Q6wQIsHNtSZZzQ0iGL1D7KfM4elZt0iNYalysS2l9nS Rk+U5UuON50xdj2hIpzToRVm45OOEMgTJGn6Zsm+yhdwzuXVLIDw0iAMihQdAaex qzomCetDo2TQEe99iZpKsILwD39xg0TWksH81o+JKtkbp5AhUdNF5kx9OFn6kkzZ AkpdFBid8N25QGl3Wt3wTIZEVuK9mVh7EEC9xIOThHcuTs0scuE1X23duIjvIKbg eCIbfdnutyxymUQyOcPk6AcBnhLUyoVYavUe6SWR6eIYv38e2OfxofV+fjFLJ03W EMKW6YqBO3+ieMX0LXVnig5VQhDGMHPF4bznky0PJtNI0onQfeY1r6KFBEmeXdJ0 tZdKxQUj4yQ4IiXTxGKt4y7WkNWxPYNyedJMFO3uz6kwjjRTeBNrcpxy/jMLXhLt pyo47BTEfwJOWyCDaqfQo1Q4r8OIE46tZvBmNpFZtoR9XnfC8rqE3PLOkW/Mdc24 KQe/dUBDs3IMW/NkUch6ckljjYtMmU7D3HK9JrZUwKePq6l9eOI3RKe4WgAS8adQ Rrc543hzD/Dy3corjJy33FDMK5DvMrYQlSFn4q/LsmC1YdXEjRecCbA9PYvpR4G9 bhB8QIKmiZl3 =Ho6O -----END PGP SIGNATURE-----
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