Your message dated Sat, 25 Dec 2021 19:07:08 +0000
with message-id <e1n1cno-000h23...@fasolo.debian.org>
and subject line Bug#1002525: fixed in r-cran-tmb 1.7.22-2
has caused the Debian Bug report #1002525,
regarding r-cran-tmb: autopkgtest needs update for new version of rmatrix:
Package version inconsistency detected.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1002525: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1002525
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-cran-tmb
Version: 1.7.22-1
Severity: serious
X-Debbugs-CC: debian...@lists.debian.org, rmat...@packages.debian.org
Tags: sid bookworm
User: debian...@lists.debian.org
Usertags: needs-update
Control: affects -1 src:rmatrix
Dear maintainer(s),
With a recent upload of rmatrix the autopkgtest of r-cran-tmb fails in
testing when that autopkgtest is run with the binary packages of rmatrix
from unstable. It passes when run with only packages from testing. In
tabular form:
pass fail
rmatrix from testing 1.4-0-1
r-cran-tmb from testing 1.7.22-1
all others from testing from testing
I copied some of the output at the bottom of this report. It seems the
binary embeds the version of rmatrix it's build against without
declaring proper versioned Dependencies to reflect that.
Currently this regression is blocking the migration of rmatrix to
testing [1]. Of course, rmatrix shouldn't just break your autopkgtest
(or even worse, your package), but it seems to me that the change in
rmatrix was intended and your package needs to update to the new situation.
If this is a real problem in your package (and not only in your
autopkgtest), the right binary package(s) from rmatrix should really add
a versioned Breaks on the unfixed version of (one of your) package(s).
Note: the Breaks is nice even if the issue is only in the autopkgtest as
it helps the migration software to figure out the right versions to
combine in the tests.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=rmatrix
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-tmb/17813190/log.gz
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options("warn" = 2); library(TMB)
Error: package or namespace load failed for ‘TMB’:
.onLoad failed in loadNamespace() for 'TMB', details:
call: checkMatrixPackageVersion()
error: (converted from warning) Package version inconsistency detected.
TMB was built with Matrix version 1.3.4
Current Matrix version is 1.4.0
Please re-install 'TMB' from source using install.packages('TMB', type =
'source') or ask CRAN for a binary version of 'TMB' matching CRAN's
'Matrix' package
Execution halted
autopkgtest [16:11:05]: test r-cran-matrix_compatibility
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: r-cran-tmb
Source-Version: 1.7.22-2
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
r-cran-tmb, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1002...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated r-cran-tmb package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 26 Dec 2021 00:01:07 +0530
Source: r-cran-tmb
Architecture: source
Version: 1.7.22-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 1002525
Changes:
r-cran-tmb (1.7.22-2) unstable; urgency=medium
.
* Team Upload.
* Versioned dep on r-cran-matrix to get the
latter migrate to testing (Closes: #1002525)
Checksums-Sha1:
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4fd6d0cd31676f675d7c7c13d4a82b5d9694ca46 10627
r-cran-tmb_1.7.22-2_amd64.buildinfo
Checksums-Sha256:
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r-cran-tmb_1.7.22-2.dsc
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r-cran-tmb_1.7.22-2_amd64.buildinfo
Files:
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c8252d85aeb741e0b14111f7e7611b91 3276 gnu-r optional
r-cran-tmb_1.7.22-2.debian.tar.xz
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r-cran-tmb_1.7.22-2_amd64.buildinfo
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