Your message dated Mon, 06 Dec 2021 15:19:26 +0000 with message-id <e1mufm2-000dbg...@fasolo.debian.org> and subject line Bug#984047: fixed in elastix 5.0.1-1 has caused the Debian Bug report #984047, regarding elastix: ftbfs with GCC-11 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 984047: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984047 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:elastix Version: 4.9.0-2 Severity: normal Tags: sid bookworm User: debian-...@lists.debian.org Usertags: ftbfs-gcc-11 [This bug is not targeted to the upcoming bullseye release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://people.debian.org/~doko/logs/20210228/filtered/gcc11/elastix_4.9.0-2_unstable_gcc11.log The last lines of the build log are at the end of this report. To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-11/porting_to.html GCC 11 defaults to the GNU++17 standard. If your package installs header files in /usr/include, please don't work around C++17 issues by choosing a lower C++ standard for the package build, but fix these issues to build with the C++17 standard. [...] [ 38%] Linking CXX executable ../bin/itkBSplineJacobianGradientPerformanceTest cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkAccumulateDerivativesParallellizationTest.cxx.o CMakeFiles/itkAccumulateDerivativesParallellizationTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAccumulateDerivativesParallellizationTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu /libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/ lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /u sr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkBSplineJacobianGradientPerformanceTest.cxx.o CMakeFiles/itkBSplineJacobianGradientPerformanceTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkBSplineJacobianGradientPerformanceTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.1 5.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml 2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIO Meta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libIT KTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 38%] Built target itkBSplineJacobianGradientPerformanceTest make -f Testing/CMakeFiles/elxInvertTransform.dir/build.make Testing/CMakeFiles/elxInvertTransform.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/Testing /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing/CMakeFiles/elxInvertTransform.dir/DependInfo.cmake --color= Dependee "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing/CMakeFiles/elxInvertTransform.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing/CMakeFiles/elxInvertTransform.dir/depend.internal". 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Scanning dependencies of target elxInvertTransform make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/elxInvertTransform.dir/build.make Testing/CMakeFiles/elxInvertTransform.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 38%] Building CXX object Testing/CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optim izers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o -c /<<PKGBUILDDIR>>/Testing/elxInvertTransform.cxx make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 38%] Built target itkAccumulateDerivativesParallellizationTest make -f Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/build.make Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/depend make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/Testing /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/DependInfo.cmake --color= Dependee "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/depend.internal". 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Scanning dependencies of target itkCompareCompositeTransformsTest make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make -f Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/build.make Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/build make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 38%] Building CXX object Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optim izers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCompareCompositeTransformsTest.cxx In file included from /<<PKGBUILDDIR>>/Testing/itkCompareCompositeTransformsTest.cxx:28: /<<PKGBUILDDIR>>/Common/Transforms/itkAdvancedCombinationTransform.h:350:52: error: ISO C++17 does not allow dynamic exception specifications 350 | virtual void NoCurrentTransformSet( void ) const throw ( ExceptionObject ); | ^~~~~ In file included from /<<PKGBUILDDIR>>/Common/Transforms/itkAdvancedCombinationTransform.h:638, from /<<PKGBUILDDIR>>/Testing/itkCompareCompositeTransformsTest.cxx:28: /<<PKGBUILDDIR>>/Common/Transforms/itkAdvancedCombinationTransform.hxx:735:39: error: ISO C++17 does not allow dynamic exception specifications 735 | ::NoCurrentTransformSet( void ) const throw ( ExceptionObject ) | ^~~~~ make[3]: *** [Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/build.make:85: Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/itkCompareCompositeTransformsTest.cxx.o] Error 1 make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[2]: *** [CMakeFiles/Makefile2:5216: Testing/CMakeFiles/itkCompareCompositeTransformsTest.dir/all] Error 2 make[2]: *** Waiting for unfinished jobs.... [ 39%] Building CXX object Testing/CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optim izers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx [ 40%] Building CXX object Testing/CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers -I/<<PKGBUILDDIR>>/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/Common/Transforms -I/<<PKGBUILDDIR>>/Common/xout -I/<<PKGBUILDDIR>>/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/Core -I/<<PKGBUILDDIR>>/Core/Install -I/<<PKGBUILDDIR>>/Core/Kernel -I/<<PKGBUILDDIR>>/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/Core/Configuration -I/<<PKGBUILDDIR>>/Core/Main -I/<<PKGBUILDDIR>>/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/Components/ImageSamplers -I/<<PKGBUILDDIR>>/Components/Interpolators -I/<<PKGBUILDDIR>>/Components/Metrics -I/<<PKGBUILDDIR>>/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/Components/Optim izers -I/<<PKGBUILDDIR>>/Components/Registrations -I/<<PKGBUILDDIR>>/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/Components/Resamplers -I/<<PKGBUILDDIR>>/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -isystem /usr/include/gdcm-3.0 -isystem /usr/include/ITK-4.13 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx [ 41%] Building CXX object Testing/CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/nifti -I/<<PKGBUILDDIR>>/Common -I/<<PKGBUILDDIR>>/Common/CostFunctions -I/<<PKGBUILDDIR>>/Common/ImageSamplers 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-fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o -c /<<PKGBUILDDIR>>/Testing/itkCommandLineArgumentParser.cxx [ 41%] Linking CXX executable ../bin/elxTransformParametersCompare cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxTransformParametersCompare.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/elxTransformParametersCompare.dir/elxTransformParametersCompare.cxx.o CMakeFiles/elxTransformParametersCompare.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/elxTransformParametersCompare ../bin/libparam-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux -gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x8 6_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so .1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/li b/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 41%] Built target elxTransformParametersCompare [ 41%] Linking CXX executable ../bin/elxInvertTransform cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/elxInvertTransform.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/elxInvertTransform.dir/elxInvertTransform.cxx.o CMakeFiles/elxInvertTransform.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/elxInvertTransform ../bin/libparam-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64 -linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml2 /usr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/l ib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta-4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/ libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTransformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersh eds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 41%] Built target elxInvertTransform [ 41%] Linking CXX executable ../bin/itkAdvancedRecursiveBSplineTransformTest cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Testing && /usr/bin/cmake -E cmake_link_script CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -lniftiio -rdynamic CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkAdvancedRecursiveBSplineTransformTest.cxx.o CMakeFiles/itkAdvancedRecursiveBSplineTransformTest.dir/itkCommandLineArgumentParser.cxx.o -o ../bin/itkAdvancedRecursiveBSplineTransformTest ../bin/libparam-4.9.a ../bin/libmevisdcmtiff-4.9.a /usr/lib/x86_64-linux-gnu/libdouble-conversion.so.3.1 -lz -ljpeg -lznz -lniftiio -lpng -ltiff /usr/lib/x86_64-linux-gnu/libi2d.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpeg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg8.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg12.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libijg16.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmjpls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcharls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libcmr.so.15.3. 6.5 /usr/lib/x86_64-linux-gnu/libdcmwlm.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpstat.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmrt.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmseg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmtract.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmpmap.so.15.3.6.5 /usr/lib/libITKDeprecated-4.13.so.1 /usr/lib/libITKIOLSM-4.13.so.1 -lexpat /usr/lib/libITKIOMesh-4.13.so.1 /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5_cpp.so /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lsz -ldl -lm /usr/lib/libITKIOBruker-4.13.so.1 /usr/lib/libITKIOCSV-4.13.so.1 /usr/lib/libITKIOHDF5-4.13.so.1 -lminc2 -lm -ldl -lrt -lnetcdf /usr/lib/libITKIOMINC-4.13.so.1 /usr/lib/libITKIOMRC-4.13.so.1 /usr/lib/libITKOptimizersv4-4.13.so.1 /usr/lib/libITKReview-4.13.so.1 /usr/lib/libITKVideoIO-4.13.so.1 /usr/lib/x86_64-linux-gnu/libdcmtls.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmsr.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmimage.so.15.3.6.5 -ljpeg -lpng -ltiff -lxml2 /u sr/lib/x86_64-linux-gnu/libdcmdsig.so.15.3.6.5 -lssl -lcrypto /usr/lib/x86_64-linux-gnu/libdcmqrdb.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmnet.so.15.3.6.5 -lwrap /usr/lib/x86_64-linux-gnu/libdcmimgle.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmfg.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmiod.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libdcmdata.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/liboflog.so.15.3.6.5 /usr/lib/x86_64-linux-gnu/libofstd.so.15.3.6.5 -licuuc -licudata -lnsl -lpthread /usr/lib/libITKDICOMParser-4.13.so.1 /usr/lib/libITKgiftiio-4.13.so.1 -lznz -lniftiio -lexpat /usr/lib/libitklbfgs-4.13.so.1 /usr/lib/libITKIOBMP-4.13.so.1 /usr/lib/libITKIOGDCM-4.13.so.1 /usr/lib/x86_64-linux-gnu/libgdcmMSFF.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDICT.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmIOD.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmDSED.so.3.0.8 /usr/lib/x86_64-linux-gnu/libgdcmCommon.so.3.0.8 /usr/lib/libITKIOGIPL-4.13.so.1 /usr/lib/libITKIOJPEG-4.13.so.1 /usr/lib/libITKIOMeta -4.13.so.1 /usr/lib/libITKIONIFTI-4.13.so.1 /usr/lib/libITKIONRRD-4.13.so.1 /usr/lib/libITKNrrdIO-4.13.so.1 /usr/lib/libITKIOPNG-4.13.so.1 /usr/lib/libITKIOTIFF-4.13.so.1 /usr/lib/libITKIOVTK-4.13.so.1 /usr/lib/libITKLabelMap-4.13.so.1 /usr/lib/libITKQuadEdgeMesh-4.13.so.1 /usr/lib/libITKPolynomials-4.13.so.1 /usr/lib/libITKBiasCorrection-4.13.so.1 /usr/lib/libITKBioCell-4.13.so.1 /usr/lib/libITKFFT-4.13.so.1 -lfftw3 -lfftw3_threads -lfftw3f -lfftw3f_threads /usr/lib/libITKIOBioRad-4.13.so.1 /usr/lib/libITKIOStimulate-4.13.so.1 /usr/lib/libITKIOSpatialObjects-4.13.so.1 /usr/lib/libITKIOXML-4.13.so.1 /usr/lib/libITKFEM-4.13.so.1 /usr/lib/libITKMetaIO-4.13.so.1 -lz /usr/lib/libITKOptimizers-4.13.so.1 /usr/lib/libITKIOGE-4.13.so.1 /usr/lib/libITKIOSiemens-4.13.so.1 /usr/lib/libITKIOIPL-4.13.so.1 /usr/lib/libITKIOTransformHDF5-4.13.so.1 /usr/lib/libITKIOTransformInsightLegacy-4.13.so.1 /usr/lib/libITKIOTransformMatlab-4.13.so.1 /usr/lib/libITKIOTransformBase-4.13.so.1 /usr/lib/libITKTra nsformFactory-4.13.so.1 /usr/lib/libITKKLMRegionGrowing-4.13.so.1 /usr/lib/libITKVTK-4.13.so.1 /usr/lib/libITKWatersheds-4.13.so.1 /usr/lib/libITKStatistics-4.13.so.1 /usr/lib/libitkNetlibSlatec-4.13.so.1 /usr/lib/libITKSpatialObjects-4.13.so.1 /usr/lib/libITKMesh-4.13.so.1 /usr/lib/libITKTransform-4.13.so.1 /usr/lib/libITKPath-4.13.so.1 /usr/lib/libitkopenjpeg-4.13.so.1 /usr/lib/libITKIOImageBase-4.13.so.1 /usr/lib/libITKVideoCore-4.13.so.1 /usr/lib/libITKCommon-4.13.so.1 /usr/lib/libitksys-4.13.so.1 /usr/lib/libITKVNLInstantiation-4.13.so.1 /usr/lib/libitkvnl_algo-4.13.so.1 /usr/lib/libitkvnl-4.13.so.1 /usr/lib/libitkv3p_netlib-4.13.so.1 /usr/lib/libitknetlib-4.13.so.1 /usr/lib/libitkvcl-4.13.so.1 -lm -lpthread -ldl -lm make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' [ 41%] Built target itkAdvancedRecursiveBSplineTransformTest make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' make[1]: *** [Makefile:163: all] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu' dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 returned exit code 2 make: *** [debian/rules:12: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---Source: elastix Source-Version: 5.0.1-1 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of elastix, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 984...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated elastix package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 06 Dec 2021 10:47:07 +0100 Source: elastix Architecture: source Version: 5.0.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 909280 984047 Changes: elastix (5.0.1-1) unstable; urgency=medium . [ Andreas Tille ] * Team upload. * New upstream version Closes: #909280, #984047 * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Remove trailing whitespace in debian/copyright (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Remove debian/.gitlab-ci.yml in favour of debian/salsa-ci.yml * Trim trailing whitespace. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Avoid explicitly specifying -Wl,--as-needed linker flag. * Apply multi-arch hints. + elastix-doc: Add Multi-Arch: foreign. * Remove debian/.gitlab-ci.yml in favour of debian/salsa-ci.yml * Build-Depends: s/libinsighttoolkit4-dev/libinsighttoolkit5-dev/ * Build-Depends: libcharls-dev * Fix install * Enable dh_missing --fail-missing * Install libANNlib-5.0.so . [ Gert Wollny ] * d/control: remove Gert Wollny from uploaders Checksums-Sha1: 1daa4a3c32da836e088a90a70edec05e29689a84 2297 elastix_5.0.1-1.dsc 2e0ce539958cd3f6f0c8a962509a3031eb6bcd91 20596358 elastix_5.0.1.orig.tar.gz ee887aac9ea473894fcd687eb46ae935ee4a918f 10308 elastix_5.0.1-1.debian.tar.xz b13b5eed21f40896e89fdb535e2e9bd4469009e9 12347 elastix_5.0.1-1_amd64.buildinfo Checksums-Sha256: 3531530497eceb5fd0ae392e60542450642cd9e5ff889ed492efca5951a4e42f 2297 elastix_5.0.1-1.dsc 83a7a82f9c814c439d9d00f47926b3f45f7962b402be20c4e7b905ad3f954d70 20596358 elastix_5.0.1.orig.tar.gz 5bef174e80476b10a01de3cced4cdb0078aa4526837e0f03c629d254847a6ee4 10308 elastix_5.0.1-1.debian.tar.xz 3466cdf77f04b19ffe46d8a8cb94e6a361102409274b60ecc7fb2c55fe43e25e 12347 elastix_5.0.1-1_amd64.buildinfo Files: 14bb75c04f9664bb4fe5ccf982d9efb2 2297 science optional elastix_5.0.1-1.dsc 73f01fa02c2f98693c9694f1c2afa634 20596358 science optional elastix_5.0.1.orig.tar.gz 411813f334fa727945ec665d7e9244c3 10308 science optional elastix_5.0.1-1.debian.tar.xz a421e06b6c39b32c8fcfe86d23c9676e 12347 science optional elastix_5.0.1-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmGuJxsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHGqhAAmzV+gSV8lgWjULARgf3jfcjiwOksZc1n YPEQn7I+Tam/xVKnRGTzD+ZHiJceN+B+CwRmTXjDG1xyx38xVtl/lG2vVqseShbu pjLh+plRR0Izy761IWm2HBjYhCnJHreutL5+7/0qBYrGXUuhjM/VUl0GUffiZ7o9 Zj2AP5sjoZes9u6LRNz3c4Puwy4mjK1XFXElU7UaSpr3xIgT/IyxBsuz6tcqXfnY N43W0Fha30w3ZFNIAERKBGeqXvl7WFh5ql6qfdQeNdvTnJMi5RbU2XQiSC/04UYT gufPe7QPTJmiMPOKRKfGcfxDDp+6KqnySJqR/mHoQFL0lkXe5rAnoLeHhLjggxG8 o3Wa1drN4R5VGBtzQaF74wbK9tTbT4ICBKEXEfC8CKs2QLP8pzfLiJXTo0QbeSij ALaSoSDjjQtmhbGBComWXmqFWarIkIhbU8W3MUIqHajErEjT1OJ26UsYk58Py8W5 URC5Ie4bFpQXNSd38xb3iVn8ntXhFJMoZusVmi8M42YS4gwqJIJBY9KkpvXWFbXC kbw0oEVtdhFQZsMnReB8Wc434w58Hs6SpP/ExCEUf0OPZzsBB/SOjU4WX/karLqv 2zGbUj5sTMoyXwQ0qLgxUkvHj98MnALW6Buqk00SjURNzQOJB7uCQyW1ovQcGw97 Yz0OXL7ssQ8= =UDkZ -----END PGP SIGNATURE-----
--- End Message ---
