Source: python-skbio Version: 0.5.6-5 Severity: serious Tags: ftbfs patch User: debian-pyt...@lists.debian.org Usertags: python3.10
Hi Maintainer Now that scikit-learn has at least built on amd64 [1], we can now see a new failure in python-skbio [2]. I have copied part of the log below. This is due to .c files in the upstream tarball being generated by an old version of cython. The solution is to add cython3 as a build-dependency and regenerate the .c files at build time. I've attached a patch that does this. Regards Graham [1] https://buildd.debian.org/status/package.php?p=scikit-learn [2] https://buildd.debian.org/status/package.php?p=python-skbio&suite=sid skbio/alignment/_ssw_wrapper.c: In function ‘__pyx_tp_dealloc_5skbio_9alignment_12_ssw_wrapper_AlignmentStructure’: skbio/alignment/_ssw_wrapper.c:10363:5: error: lvalue required as increment operand 10363 | ++Py_REFCNT(o); | ^~ skbio/alignment/_ssw_wrapper.c:10365:5: error: lvalue required as decrement operand 10365 | --Py_REFCNT(o); | ^~ skbio/alignment/_ssw_wrapper.c: In function ‘__pyx_tp_dealloc_5skbio_9alignment_12_ssw_wrapper_StripedSmithWaterman’: skbio/alignment/_ssw_wrapper.c:10570:5: error: lvalue required as increment operand 10570 | ++Py_REFCNT(o); | ^~ skbio/alignment/_ssw_wrapper.c:10572:5: error: lvalue required as decrement operand 10572 | --Py_REFCNT(o); | ^~ skbio/alignment/_ssw_wrapper.c: In function ‘__Pyx_ParseOptionalKeywords’: skbio/alignment/_ssw_wrapper.c:12453:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 12453 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : | ^
cythonize.debdiff
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