Your message dated Sat, 20 Nov 2021 03:04:46 +0000 with message-id <e1moggi-000fon...@fasolo.debian.org> and subject line Bug#999381: fixed in python-pairix 0.3.7-4.1 has caused the Debian Bug report #999381, regarding python-pairix ftbfs with Python 3.10 (test failures) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 999381: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=999381 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-pairix Version: 0.3.7-4 Severity: important Tags: ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.10 python-pairix ftbfs with python3-defaults from experimental: I: pybuild pybuild:285: cp -a /<<PKGBUILDDIR>>/samples /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pairix/build; cp -a /<<PKGBUILDDIR>>/VERSION.txt /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pairix/build; I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pairix/build; python3.10 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.10.0+, pytest-6.2.5, py-1.10.0, pluggy-0.13.0 rootdir: /<<PKGBUILDDIR>> collected 0 items / 2 errors ==================================== ERRORS ==================================== __ ERROR collecting .pybuild/cpython3_3.10_pairix/build/test/test_oldindex.py __ test/test_oldindex.py:180: in <module> class PairixTest(unittest.TestCase): test/test_oldindex.py:181: in PairixTest regions = read_vcf(TEST_FILE_1D) test/test_oldindex.py:68: in read_vcf for line in gzip.open(filename): E ValueError: readline of closed file _ ERROR collecting .pybuild/cpython3_3.10_pairix/build/test/test_oldindex2.py __ test/test_oldindex2.py:179: in <module> class PairixTest(unittest.TestCase): test/test_oldindex2.py:180: in PairixTest regions = read_vcf(TEST_FILE_1D) test/test_oldindex2.py:67: in read_vcf for line in gzip.open(filename): E ValueError: readline of closed file =============================== warnings summary =============================== test/test_oldindex.py:58 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pairix/build/test/test_oldindex.py:58: DeprecationWarning: invalid escape sequence '\s' fields = line.rstrip().split('\s+') test/test_oldindex2.py:57 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pairix/build/test/test_oldindex2.py:57: DeprecationWarning: invalid escape sequence '\s' fields = line.rstrip().split('\s+') -- Docs: https://docs.pytest.org/en/stable/warnings.html =========================== short test summary info ============================ ERROR test/test_oldindex.py - ValueError: readline of closed file ERROR test/test_oldindex2.py - ValueError: readline of closed file !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! ======================== 2 warnings, 2 errors in 0.55s ========================= E: pybuild pybuild:354: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_pairix/build; python3.10 -m pytest test
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--- Begin Message ---Source: python-pairix Source-Version: 0.3.7-4.1 Done: Stefano Rivera <stefa...@debian.org> We believe that the bug you reported is fixed in the latest version of python-pairix, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 999...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Stefano Rivera <stefa...@debian.org> (supplier of updated python-pairix package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Fri, 19 Nov 2021 22:23:41 -0400 Source: python-pairix Architecture: source Version: 0.3.7-4.1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Stefano Rivera <stefa...@debian.org> Closes: 999381 Changes: python-pairix (0.3.7-4.1) unstable; urgency=medium . * Non-maintainer upload. * Patch: Avoid tests failing under Python 3.10. (Closes: #999381) Checksums-Sha1: 831319cdc2e50e3900507d5ef72764b639a4937d 1634 python-pairix_0.3.7-4.1.dsc 57259dc151c779bb8ddb2de067c7bbebb179f3bd 4600 python-pairix_0.3.7-4.1.debian.tar.xz 2091bb1eda25a164a01ad00026f03ced5132ae6d 6399 python-pairix_0.3.7-4.1_source.buildinfo Checksums-Sha256: 42922ec9cc34216e145aac1b1253f1261c9fe91d33911bdd00572a0fa3d601a5 1634 python-pairix_0.3.7-4.1.dsc 8eda9ac507b6e51c981c75bae57e13b36b56160aa8181a41bcb6712e94641582 4600 python-pairix_0.3.7-4.1.debian.tar.xz 14a896c44c41c61a7ff80a8ef935ec965670af5c924c796062e097d7163df3f2 6399 python-pairix_0.3.7-4.1_source.buildinfo Files: bf87c1a1dda68c271158ac286e57c942 1634 science optional python-pairix_0.3.7-4.1.dsc 23772eef188dc75b42975b0828f87631 4600 science optional python-pairix_0.3.7-4.1.debian.tar.xz 37daab9413245b008a6f6704d78e259e 6399 science optional python-pairix_0.3.7-4.1_source.buildinfo -----BEGIN PGP SIGNATURE----- iIoEARYKADIWIQTumtb5BSD6EfafSCRHew2wJjpU2AUCYZhdaRQcc3RlZmFub3JA ZGViaWFuLm9yZwAKCRBHew2wJjpU2PJxAQDGLf3lzSiGYX2c9/1IiMLAYNZRXkf4 RqOPSE+8qHSZHgD+OXZXtCIfEfNvNqhbOVq2PCXVGbktsYmNffaiQaIFNw4= =Gjsa -----END PGP SIGNATURE-----
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