Your message dated Tue, 02 Nov 2021 22:48:56 +0000
with message-id <e1mi2ao-0000lg...@fasolo.debian.org>
and subject line Bug#984081: fixed in lastz 1.04.15-2
has caused the Debian Bug report #984081,
regarding lastz: ftbfs with GCC-11
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
984081: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984081
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:lastz
Version: 1.04.03-4
Severity: normal
Tags: sid bookworm
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-11
[This bug is not targeted to the upcoming bullseye release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The
severity of this report will be raised before the bookworm release,
so nothing has to be done for the bullseye release.
The full build log can be found at:
http://people.debian.org/~doko/logs/20210228/filtered/gcc11/lastz_1.04.03-4_unstable_gcc11.log
The last lines of the build log are at the end of this report.
To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-11/porting_to.html
GCC 11 defaults to the GNU++17 standard. If your package installs
header files in /usr/include, please don't work around C++17 issues
by choosing a lower C++ standard for the package build, but fix these
issues to build with the C++17 standard.
[...]
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
diag_hash.c -o diag_hash.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
chain.c -o chain.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
gapped_extend.c -o gapped_extend.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
tweener.c -o tweener.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
masking.c -o masking.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
segment.c -o segment.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
edit_script.c -o edit_script.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
identity_dist.c -o identity_dist.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
coverage_dist.c -o coverage_dist.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
continuity_dist.c -o continuity_dist.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
output.c -o output.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\' gfa.c
-o gfa.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\' lav.c
-o lav.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\' axt.c
-o axt.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\' maf.c
-o maf.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
cigar.c -o cigar.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\' sam.c
-o sam.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
genpaf.c -o genpaf.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
text_align.c -o text_align.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
align_diffs.c -o align_diffs.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
utilities.c -o utilities.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
dna_utilities.c -o dna_utilities.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
sequences.c -o sequences.o
sequences.c:4030:33: error: argument 2 of type ‘char[101]’ with mismatched
bound [-Werror=array-parameter=]
4030 | char seqName[maxSequenceName+1],
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:3624:51: note: previously declared as ‘char[256]’
3624 | static u32 read_2bit_index_entry (seq* _seq, char seqName[256], u32
seqNum);
| ~~~~~^~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'I\'
capsule.c -o capsule.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
lastz.c -o lastz_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
infer_scores.c -o infer_scores_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
seeds.c -o seeds_D.o
sequences.c: In function ‘load_2bit_sequence’:
sequences.c:3705:22: error: ‘read_2bit_index_entry’ accessing 256 bytes in a
region of size 101 [-Werror=stringop-overflow=]
3705 | seqDataPos = read_2bit_index_entry (_seq, seqName,
_seq->contig);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c:3705:22: note: referencing argument 2 of type ‘char *’
sequences.c:4028:12: note: in a call to function ‘read_2bit_index_entry’
4028 | static u32 read_2bit_index_entry
| ^~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
pos_table.c -o pos_table_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
quantum.c -o quantum_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
seed_search.c -o seed_search_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
diag_hash.c -o diag_hash_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
chain.c -o chain_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
gapped_extend.c -o gapped_extend_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
tweener.c -o tweener_D.o
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
masking.c -o masking_D.o
In function ‘find_2bit_sequence’,
inlined from ‘read_2bit_header’ at sequences.c:3667:8,
inlined from ‘private_open_sequence_file’ at sequences.c:1189:3:
sequences.c:4018:17: error: ‘read_2bit_index_entry’ accessing 256 bytes in a
region of size 101 [-Werror=stringop-overflow=]
4018 | read_2bit_index_entry (_seq, seqName, ix+1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequences.c: In function ‘private_open_sequence_file’:
sequences.c:4018:17: note: referencing argument 2 of type ‘char *’
sequences.c:4028:12: note: in a call to function ‘read_2bit_index_entry’
4028 | static u32 read_2bit_index_entry
| ^~~~~~~~~~~~~~~~~~~~~
gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-Wformat -Werror=format-security -Wno-stringop-truncation -O3 -Wall -Wextra
-Werror -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DVERSION_MAJOR="\"1"\"
-DVERSION_MINOR="\"04"\" -DVERSION_SUBMINOR="\"03"\"
-DREVISION_DATE="\"20191114"\" -DSUBVERSION_REV="\""\" -Dscore_type=\'D\'
segment.c -o segment_D.o
cc1: all warnings being treated as errors
make[2]: *** [Makefile:94: sequences.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: *** [Makefile:14: build_lastz] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 "INSTALL=install --strip-program=true" returned
exit code 2
make: *** [debian/rules:13: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: lastz
Source-Version: 1.04.15-2
Done: Étienne Mollier <emoll...@debian.org>
We believe that the bug you reported is fixed in the latest version of
lastz, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 984...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <emoll...@debian.org> (supplier of updated lastz package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 02 Nov 2021 23:12:52 +0100
Source: lastz
Architecture: source
Version: 1.04.15-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emoll...@debian.org>
Closes: 984081
Changes:
lastz (1.04.15-2) unstable; urgency=medium
.
* Team upload.
* Add gcc11.patch. (Closes: #984081)
* Edit propagate_cflags.patch to propagate CPPFLAGS as well.
* d/control: lastz-examples explicitly depends on python3:any.
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