Your message dated Mon, 01 Nov 2021 14:49:08 +0000 with message-id <e1mhycw-000gsx...@fasolo.debian.org> and subject line Bug#984015: fixed in cif-tools 1.0.0-4 has caused the Debian Bug report #984015, regarding cif-tools: ftbfs with GCC-11 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 984015: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984015 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:cif-tools Version: 1.0.0-3 Severity: normal Tags: sid bookworm User: debian-...@lists.debian.org Usertags: ftbfs-gcc-11 [This bug is not targeted to the upcoming bullseye release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://people.debian.org/~doko/logs/20210228/filtered/gcc11/cif-tools_1.0.0-3_unstable_gcc11.log The last lines of the build log are at the end of this report. To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-11/porting_to.html GCC 11 defaults to the GNU++17 standard. If your package installs header files in /usr/include, please don't work around C++17 issues by choosing a lower C++ standard for the package build, but fix these issues to build with the C++17 standard. [...] mkdir -p obj >> src/pdb2cif.cpp >> src/cif2pdb.cpp >> src/cif-diff.cpp >> src/cif-drop.cpp In file included from src/cif2pdb.cpp:41: /usr/include/cif++/Cif++.hpp:461:50: error: ‘optional’ is not a member of ‘std’ 461 | struct ItemReference::item_value_as<std::optional<T>> | ^~~~~~~~ /usr/include/cif++/Cif++.hpp:41:1: note: ‘std::optional’ is defined in header ‘<optional>’; did you forget to ‘#include <optional>’? 40 | #include "cif++/CifUtils.hpp" +++ |+#include <optional> 41 | /usr/include/cif++/Cif++.hpp:461:59: error: template argument 1 is invalid 461 | struct ItemReference::item_value_as<std::optional<T>> | ^ /usr/include/cif++/Cif++.hpp:461:60: error: expected unqualified-id before ‘>’ token 461 | struct ItemReference::item_value_as<std::optional<T>> | ^~ In file included from src/pdb2cif.cpp:42: /usr/include/cif++/Cif++.hpp:461:50: error: ‘optional’ is not a member of ‘std’ 461 | struct ItemReference::item_value_as<std::optional<T>> | ^~~~~~~~ /usr/include/cif++/Cif++.hpp:41:1: note: ‘std::optional’ is defined in header ‘<optional>’; did you forget to ‘#include <optional>’? 40 | #include "cif++/CifUtils.hpp" +++ |+#include <optional> 41 | /usr/include/cif++/Cif++.hpp:461:59: error: template argument 1 is invalid 461 | struct ItemReference::item_value_as<std::optional<T>> | ^ /usr/include/cif++/Cif++.hpp:461:60: error: expected unqualified-id before ‘>’ token 461 | struct ItemReference::item_value_as<std::optional<T>> | ^~ In file included from src/cif-drop.cpp:40: /usr/include/cif++/Cif++.hpp:461:50: error: ‘optional’ is not a member of ‘std’ 461 | struct ItemReference::item_value_as<std::optional<T>> | ^~~~~~~~ /usr/include/cif++/Cif++.hpp:41:1: note: ‘std::optional’ is defined in header ‘<optional>’; did you forget to ‘#include <optional>’? 40 | #include "cif++/CifUtils.hpp" +++ |+#include <optional> 41 | /usr/include/cif++/Cif++.hpp:461:59: error: template argument 1 is invalid 461 | struct ItemReference::item_value_as<std::optional<T>> | ^ /usr/include/cif++/Cif++.hpp:461:60: error: expected unqualified-id before ‘>’ token 461 | struct ItemReference::item_value_as<std::optional<T>> | ^~ In file included from src/cif-diff.cpp:44: /usr/include/cif++/Cif++.hpp:461:50: error: ‘optional’ is not a member of ‘std’ 461 | struct ItemReference::item_value_as<std::optional<T>> | ^~~~~~~~ /usr/include/cif++/Cif++.hpp:41:1: note: ‘std::optional’ is defined in header ‘<optional>’; did you forget to ‘#include <optional>’? 40 | #include "cif++/CifUtils.hpp" +++ |+#include <optional> 41 | /usr/include/cif++/Cif++.hpp:461:59: error: template argument 1 is invalid 461 | struct ItemReference::item_value_as<std::optional<T>> | ^ /usr/include/cif++/Cif++.hpp:461:60: error: expected unqualified-id before ‘>’ token 461 | struct ItemReference::item_value_as<std::optional<T>> | ^~ make[1]: *** [GNUmakefile:101: obj/cif-drop.o] Error 1 make[1]: *** Waiting for unfinished jobs.... make[1]: *** [GNUmakefile:101: obj/cif-diff.o] Error 1 make[1]: *** [GNUmakefile:101: obj/cif2pdb.o] Error 1 make[1]: *** [GNUmakefile:101: obj/pdb2cif.o] Error 1 make[1]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build: error: make -j4 returned exit code 2 make: *** [debian/rules:14: binary] Error 25 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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--- Begin Message ---Source: cif-tools Source-Version: 1.0.0-4 Done: Nilesh Patra <nil...@debian.org> We believe that the bug you reported is fixed in the latest version of cif-tools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 984...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Nilesh Patra <nil...@debian.org> (supplier of updated cif-tools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Mon, 01 Nov 2021 19:49:48 +0530 Source: cif-tools Architecture: source Version: 1.0.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Nilesh Patra <nil...@debian.org> Closes: 984015 Changes: cif-tools (1.0.0-4) unstable; urgency=medium . * Team upload. * Tighten B-D and test-dep on libcifpp-dev to build with (gcc11-)fixed version of the same (Closes: #984015) Checksums-Sha1: 8892a560a939ac131131cf3b787b9fbec1391d9e 2190 cif-tools_1.0.0-4.dsc b672ea1630fc5598d9d500abb9331c0443e41375 4244 cif-tools_1.0.0-4.debian.tar.xz 792c79e3a97292f5e82e1f92a1165a6a779dc01c 6845 cif-tools_1.0.0-4_amd64.buildinfo Checksums-Sha256: 957fc44379009e10311a9a179a6957f0ba89c1a9bed3540b7f6fc916d0eaf7dc 2190 cif-tools_1.0.0-4.dsc 314c610af56efac36671715f9aef2af771d4a5e2ef819d9c6b54a76e6004f2f3 4244 cif-tools_1.0.0-4.debian.tar.xz 4f044500f12e2a9f96368a46f38b84833b03a807f23e99ba20437dbaf07494e3 6845 cif-tools_1.0.0-4_amd64.buildinfo Files: 8ed1361d21ed18b322e88ed1a0e68eeb 2190 science optional cif-tools_1.0.0-4.dsc c1c0a1971613d7ddef6ef7662f22d9e3 4244 science optional cif-tools_1.0.0-4.debian.tar.xz c0210584fbeb3d977a5241503f47d3c6 6845 science optional cif-tools_1.0.0-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmF/+XQSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nx/JIP/RVAYys3TeTbECA9NpRUmu4P5I+h6xih m6pPefstLoeQhcT4jgP1e4LS1tHe5WyGvNYOA0AwmmSUCrOtLUh+vbLuK7KIfAdx cTYOmiAHN3wmYt5BxgQAhtS9jI16yeQBtiwz7Io0HfiRf6KO2AhvivnLaXoauuYs dEw/fTGYcQfhQKthu7iACcokiZYAJGM+tUD9z9HQrMTqPnKAIuY7/coAA5MhB3RB O5Wi8S/K/t86vkest6A2fMnN033B/kWSP4PgDD3SIUl35qW2ciTMIzNVBJqZCTpZ W9iRG9Siin+KNuGLvvgaXH0EybcsQu4afelQoF67vYzV+ifSA8qc63WNz4wHFTHi ZR+hXZEd+oweDJ3QZhCo+aDBuyne9vdLpHV6FS85z2MBnL5xxYF9w+knssTdRZMN Plzs/Thj2VP2xEMyvhdDbPhVLy9CUXckHGdzBjag+6iyTLRYywEvH0e2vBWYWKWs fq+lJEWhFm589ZlNgjNPz9bVsfZO261Z4/tbkoW/YGNuTm9mftUuZJMKm12i/qd8 D6C5k8lxhX2turZCBFZdgicbZj8AhS0JGdz/lpCP2NCskEyRxfnjDIb/WAXSIjtA 0WK8HMCz/oOciI4cV/lkWxN5yjoBqQ/ss2jDCvSPO+jGeVNPvr2BbD0DtNyiVweW QzHq+EpdnXgO =vvOG -----END PGP SIGNATURE-----
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