Your message dated Sun, 31 Oct 2021 19:34:35 +0000
with message-id <e1mhgbd-0006u4...@fasolo.debian.org>
and subject line Bug#997266: fixed in trinculo 0.96+dfsg-4
has caused the Debian Bug report #997266,
regarding trinculo: FTBFS: src/trinculo.cpp:45:19: error: invalid ‘static_cast’
from type ‘std::__cxx11::basic_ostringstream<char>’ to type
‘std::ostringstream&’ {aka ‘std::__cxx11::basic_ostringstream<char>&’}
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
997266: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997266
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: trinculo
Version: 0.96+dfsg-3
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -DLINUX -Isrc -o
> bin/trinculo src/trinculo.cpp -llapack -lpthread -Wl,-z,relro -Wl,-z,now
> src/trinculo.cpp: In function ‘int runMultinom(inputs*, bedfile*,
> dosagefile*, covars*, phenos*, std::vector<int>)’:
> src/trinculo.cpp:45:19: error: invalid ‘static_cast’ from type
> ‘std::__cxx11::basic_ostringstream<char>’ to type ‘std::ostringstream&’ {aka
> ‘std::__cxx11::basic_ostringstream<char>&’}
> 45 | #define SSTR( x ) dynamic_cast< std::ostringstream & >( \
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> 46 | ( std::ostringstream() << std::dec << x ) ).str()
> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> src/trinculo.cpp:412:58: note: in expansion of macro ‘SSTR’
> 412 | fullnames.push_back(keepName + "_cov" + SSTR(j+1));
> | ^~~~
> make[1]: *** [debian/rules:14: override_dh_auto_build] Error 1
The full build log is available from:
http://qa-logs.debian.net/2021/10/23/trinculo_0.96+dfsg-3_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: trinculo
Source-Version: 0.96+dfsg-4
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
trinculo, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 997...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated trinculo package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 01 Nov 2021 00:43:03 +0530
Source: trinculo
Architecture: source
Version: 0.96+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 997266
Changes:
trinculo (0.96+dfsg-4) unstable; urgency=medium
.
* Add patch to fix FTBFS with gcc-11 (Closes: #997266)
* Add myself as an uploader instead
+ Thanks Pranav, for your work so far
* Bump debhelper compatibility level to 13
* Bump Standards-Version to 4.6.0 (no changes needed)
* Port python2 scripts to python3 fix interpreter, fix bugs in them
* Install trinculo in /usr/bin, not in /bin
* Run testing.py file (vendored by upstream) as autopkgtest as well
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