Your message dated Sun, 24 Oct 2021 22:07:15 +0000 with message-id <e1mele7-0001c0...@fasolo.debian.org> and subject line Bug#997180: fixed in samtools 1.13-3 has caused the Debian Bug report #997180, regarding samtools: FTBFS: bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security] to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 997180: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997180 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: samtools Version: 1.13-2 Severity: serious Justification: FTBFS Tags: bookworm sid ftbfs Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -Wformat -Werror=format-security -I. -I./lz4 -frelease -Wdate-time > -D_FORTIFY_SOURCE=2 -c -o bam_tview_curses.o bam_tview_curses.c > cc1: warning: command-line option ‘-frelease’ is valid for D but not for C > bam_tview_curses.c: In function ‘curses_mvprintw’: > bam_tview_curses.c:88:5: error: format not a string literal and no format > arguments [-Werror=format-security] > 88 | mvprintw(y,x,str); > | ^~~~~~~~ > cc1: some warnings being treated as errors > make[2]: *** [Makefile:142: bam_tview_curses.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2021/10/23/samtools_1.13-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: samtools Source-Version: 1.13-3 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of samtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 997...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated samtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 24 Oct 2021 20:25:10 +0200 Source: samtools Architecture: source Version: 1.13-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 997180 Changes: samtools (1.13-3) unstable; urgency=medium . * [ee4c97e] d/rules: fix several issues in manual pages. * [488881b] Add fix-ftbfs-mvprintw.patch (Closes: #997180) * [da4dc4a] d/rules: disable executable bit on ac_test.bed. * [fbfd6c9] Add samtools-fasta-q-whatis.patch. * [4cfbf2b] d/samtools.lintian-overrides: remove *.py pattern. * [015d416] Adjust fix-ftbfs-mvprintw.patch metainformations. Thanks to John Marshall for the forward upstream! Checksums-Sha1: 6bcc6bf243c30cb68e5f6192ad51cdb6a9f5be43 2294 samtools_1.13-3.dsc 6c76007a2d2e35fbb9feb190c93ede574c3c6e37 21580 samtools_1.13-3.debian.tar.xz 64b2a8d513d8069d24094ea889e9d68018e32d4c 7149 samtools_1.13-3_amd64.buildinfo Checksums-Sha256: 897819089e38f44a81020437d89473e1862ec331f16fd4492c4f177333048a7c 2294 samtools_1.13-3.dsc 1a52079d5832f8a7551c0ba3a6750d4e9b759ca516edd89d5f4d63c7290b57f9 21580 samtools_1.13-3.debian.tar.xz 68adeae732e410efe10c238a0a63d866de7cd0ead8c01bf68eb8812295d9a1ae 7149 samtools_1.13-3_amd64.buildinfo Files: 76d3804b131868430f72bed85702c31a 2294 science optional samtools_1.13-3.dsc 6c86c195817a99fa5488b7581a3dc4f0 21580 science optional samtools_1.13-3.debian.tar.xz c31a3026b6878584e04c8c3e30340eed 7149 science optional samtools_1.13-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmF10u0UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpTlQ/+L3sfh+dsl5ImRRPqrOlIIfa6Cuk+ bxCJX7qloENm4ZvxHuXcekhC7aw5+CJuQx4J2XhYnmXj3b7wd518x6C7LjgF8xbE 2UWeLIISx0Q6YQUWHs72c/tSekyYEAJvR104zUPZjaSdAttNYZEzR1VTX8dC4rji bIfqVTOOEeoAXGf0r/Imxvhk7XCndIaixric22cmgKiPicz8TUmLnde5RIbqDYT3 zKg2QD13BerCOXbVdlKPieCTMX/V8TzgVjuTwdLsxNJhQjDrM7DxP9dNA/7VAGub gneGEglCP96WqFrDgiXZHGFB4THiI6KzodF00ZjmR14AdmGhjl3VQyCWGQvMJXyS yeX3C632W5lcuVE83j8A/kMUoG/s9bzfXHtimEX3kGV1+ao/gTU5HfloZXrtHjAF eRG2aYVLV/JTbxH4qFaGpSbNOgrqpL+RsBHp5IehH9wePnk5KQ+kqJIGn79B24fc dou2ZeZQtb+Q5XXyjqgjoOQ4LKRxmZrBXvrBCib0MnyhkOWrkqof1kMRo+xEp+Kh nq9wCCJ4f1tEHsmhFdU4COjdJBV8cSK4/8wjNetjB5hHEiKNVehAlRVdvUFifZZJ tavedR98RYFmUl7HBiuwcZrp4d63cvvan3sdBIDU0cpUUHfrn2MlGiofJVNFkiwm jSw8pYEQfjF3oLU= =3sCh -----END PGP SIGNATURE-----
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