Your message dated Sat, 23 Oct 2021 21:04:46 +0000
with message-id <e1meoc6-000eip...@fasolo.debian.org>
and subject line Bug#997320: fixed in pigx-rnaseq 0.0.19-2
has caused the Debian Bug report #997320,
regarding pigx-rnaseq: FTBFS: PermissionError: [Errno 13] Permission denied:
'/sbuild-nonexistent'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
997320: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997320
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: pigx-rnaseq
Version: 0.0.19-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> ln -sf /usr/share/javascript/jquery/jquery.min.js scripts/
> #/usr/bin/make -j2 check VERBOSE=1
> ./test.sh
> Commencing snakemake run submission locally
> Traceback (most recent call last):
> File "/usr/lib/python3/dist-packages/snakemake/__init__.py", line 540, in
> snakemake
> workflow = Workflow(
> File "/usr/lib/python3/dist-packages/snakemake/workflow.py", line 221, in
> __init__
> self.sourcecache = SourceCache()
> File "/usr/lib/python3/dist-packages/snakemake/sourcecache.py", line 270,
> in __init__
> os.makedirs(self.cache, exist_ok=True)
> File "/usr/lib/python3.9/os.py", line 215, in makedirs
> makedirs(head, exist_ok=exist_ok)
> File "/usr/lib/python3.9/os.py", line 215, in makedirs
> makedirs(head, exist_ok=exist_ok)
> File "/usr/lib/python3.9/os.py", line 215, in makedirs
> makedirs(head, exist_ok=exist_ok)
> [Previous line repeated 1 more time]
> File "/usr/lib/python3.9/os.py", line 225, in makedirs
> mkdir(name, mode)
> PermissionError: [Errno 13] Permission denied: '/sbuild-nonexistent'
> ERROR: could not find report for SALMON at transcript level
> make[1]: *** [debian/rules:43: override_dh_auto_test] Error 1
The full build log is available from:
http://qa-logs.debian.net/2021/10/23/pigx-rnaseq_0.0.19-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: pigx-rnaseq
Source-Version: 0.0.19-2
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
pigx-rnaseq, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 997...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated pigx-rnaseq package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 24 Oct 2021 02:04:47 +0530
Source: pigx-rnaseq
Architecture: source
Version: 0.0.19-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 997320
Changes:
pigx-rnaseq (0.0.19-2) unstable; urgency=medium
.
* Team Upload.
[ Steffen Moeller ]
* d/contro pigx-rnaseq binary: Added dependency on r-cran-ggpubr
* recommending both rna-star and hisat2
.
[ Nilesh Patra ]
* d/rules: Export HOME to /tmp to fix FTBFS (Closes: #997320)
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pigx-rnaseq_0.0.19-2.debian.tar.xz
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