Your message dated Tue, 12 Oct 2021 20:48:37 +0000 with message-id <e1maohr-000a0j...@fasolo.debian.org> and subject line Bug#984024: fixed in connectome-workbench 1.5.0-2 has caused the Debian Bug report #984024, regarding connectome-workbench: ftbfs with GCC-11 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 984024: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984024 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:connectome-workbench Version: 1.5.0-1 Severity: normal Tags: sid bookworm User: debian-...@lists.debian.org Usertags: ftbfs-gcc-11 [This bug is not targeted to the upcoming bullseye release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-11/g++-11, but succeeds to build with gcc-10/g++-10. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://people.debian.org/~doko/logs/20210228/filtered/gcc11/connectome-workbench_1.5.0-1_unstable_gcc11.log The last lines of the build log are at the end of this report. To build with GCC 11, either set CC=gcc-11 CXX=g++-11 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-11/porting_to.html GCC 11 defaults to the GNU++17 standard. If your package installs header files in /usr/include, please don't work around C++17 issues by choosing a lower C++ standard for the package build, but fix these issues to build with the C++17 standard. [...] [ 11%] Building CXX object Annotations/CMakeFiles/Annotations.dir/AnnotationTypeEnum.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Annotations && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Graphics -I/<<PKGBUILDDIR>>/src/Scenes -I/<<PKGBUILDDIR>>/src/Nifti -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -W -Wall -Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing -Wno-unused-local-typedefs -fPIC -std=gnu++11 -o CMakeFiles/Annotations.dir/AnnotationTypeEnum.cxx.o -c /<<PKGBUILDDIR>>/src/Annotations/AnnotationTypeEnum.cxx [ 11%] Building CXX object FilesBase/CMakeFiles/FilesBase.dir/VolumeMappableInterface.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/FilesBase && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/<<PKGBUILDDIR>>/src/Annotations -I/<<PKGBUILDDIR>>/src/FilesBase -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Palette -I/<<PKGBUILDDIR>>/src/Xml -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -W -Wall -Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing -Wno-unused-local-typedefs -fPIC -std=gnu++11 -o CMakeFiles/FilesBase.dir/VolumeMappableInterface.cxx.o -c /<<PKGBUILDDIR>>/src/FilesBase/VolumeMappableInterface.cxx [ 11%] Building CXX object Annotations/CMakeFiles/Annotations.dir/EventAnnotationAddToRemoveFromFile.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Annotations && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Graphics -I/<<PKGBUILDDIR>>/src/Scenes -I/<<PKGBUILDDIR>>/src/Nifti -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -W -Wall -Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing 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-Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing -Wno-unused-local-typedefs -fPIC -std=gnu++11 -o CMakeFiles/Annotations.dir/EventAnnotationChartLabelGet.cxx.o -c /<<PKGBUILDDIR>>/src/Annotations/EventAnnotationChartLabelGet.cxx [ 11%] Building CXX object Annotations/CMakeFiles/Annotations.dir/EventAnnotationGroupGetWithKey.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Annotations && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Graphics -I/<<PKGBUILDDIR>>/src/Scenes -I/<<PKGBUILDDIR>>/src/Nifti -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -W -Wall -Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing -Wno-unused-local-typedefs -fPIC -std=gnu++11 -o CMakeFiles/Annotations.dir/EventAnnotationGroupGetWithKey.cxx.o -c /<<PKGBUILDDIR>>/src/Annotations/EventAnnotationGroupGetWithKey.cxx [ 11%] Building CXX object FilesBase/CMakeFiles/FilesBase.dir/VolumeSpace.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/FilesBase && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/<<PKGBUILDDIR>>/src/Annotations -I/<<PKGBUILDDIR>>/src/FilesBase -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Palette -I/<<PKGBUILDDIR>>/src/Xml -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -W -Wall -Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing -Wno-unused-local-typedefs -fPIC -std=gnu++11 -o CMakeFiles/FilesBase.dir/VolumeSpace.cxx.o -c /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.cxx [ 11%] Building CXX object Annotations/CMakeFiles/Annotations.dir/EventAnnotationGrouping.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Annotations && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Graphics -I/<<PKGBUILDDIR>>/src/Scenes -I/<<PKGBUILDDIR>>/src/Nifti -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -W -Wall -Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing -Wno-unused-local-typedefs -fPIC -std=gnu++11 -o CMakeFiles/Annotations.dir/EventAnnotationGrouping.cxx.o -c /<<PKGBUILDDIR>>/src/Annotations/EventAnnotationGrouping.cxx [ 12%] Building CXX object Annotations/CMakeFiles/Annotations.dir/EventAnnotationTextGetBounds.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Annotations && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Graphics -I/<<PKGBUILDDIR>>/src/Scenes -I/<<PKGBUILDDIR>>/src/Nifti -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -W -Wall -Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing -Wno-unused-local-typedefs -fPIC -std=gnu++11 -o CMakeFiles/Annotations.dir/EventAnnotationTextGetBounds.cxx.o -c /<<PKGBUILDDIR>>/src/Annotations/EventAnnotationTextGetBounds.cxx [ 12%] Building CXX object Annotations/CMakeFiles/Annotations.dir/EventAnnotationTextSubstitutionGet.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Annotations && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Graphics -I/<<PKGBUILDDIR>>/src/Scenes -I/<<PKGBUILDDIR>>/src/Nifti -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -fopenmp -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -W -Wall -Werror=return-type -Werror=switch -Wunused-parameter -Wno-narrowing -Wno-unused-local-typedefs -fPIC -std=gnu++11 -o CMakeFiles/Annotations.dir/EventAnnotationTextSubstitutionGet.cxx.o -c /<<PKGBUILDDIR>>/src/Annotations/EventAnnotationTextSubstitutionGet.cxx /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.cxx: In member function ‘void caret::VolumeSpace::readCiftiXML1(QXmlStreamReader&)’: /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.cxx:361:85: warning: ‘QStringList QString::split(const QRegExp&, QString::SplitBehavior) const’ is deprecated: Use Qt::SplitBehavior variant instead [-Wdeprecated-declarations] 361 | QStringList matrixStrings = accum.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qiodevice.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qxmlstream.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QXmlStreamReader:1, from /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.h:29, from /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.cxx:21: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.cxx: In member function ‘void caret::VolumeSpace::readCiftiXML2(QXmlStreamReader&)’: /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.cxx:440:85: warning: ‘QStringList QString::split(const QRegExp&, QString::SplitBehavior) const’ is deprecated: Use Qt::SplitBehavior variant instead [-Wdeprecated-declarations] 440 | QStringList matrixStrings = accum.split(QRegExp("\\s+"), QString::SkipEmptyParts); | ^ In file included from /usr/include/x86_64-linux-gnu/qt5/QtCore/qobject.h:47, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qiodevice.h:45, from /usr/include/x86_64-linux-gnu/qt5/QtCore/qxmlstream.h:43, from /usr/include/x86_64-linux-gnu/qt5/QtCore/QXmlStreamReader:1, from /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.h:29, from /<<PKGBUILDDIR>>/src/FilesBase/VolumeSpace.cxx:21: /usr/include/x86_64-linux-gnu/qt5/QtCore/qstring.h:622:17: note: declared here 622 | QStringList split(const QRegExp &sep, SplitBehavior behavior) const; | ^~~~~ [ 12%] Building CXX object Annotations/CMakeFiles/Annotations.dir/EventAnnotationTextSubstitutionInvalidate.cxx.o cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Annotations && /usr/bin/c++ -DCARET_DOTFCN -DCARET_OS_LINUX -DHAVE_FREETYPE -DQT_CORE_LIB -DQT_NO_DEBUG -DWORKBENCH_HAVE_HELP_HTML -I/<<PKGBUILDDIR>>/src/kloewe/dot/src -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Graphics -I/<<PKGBUILDDIR>>/src/Scenes -I/<<PKGBUILDDIR>>/src/Nifti -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem 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--- End Message ---
--- Begin Message ---Source: connectome-workbench Source-Version: 1.5.0-2 Done: Yaroslav Halchenko <deb...@onerussian.com> We believe that the bug you reported is fixed in the latest version of connectome-workbench, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 984...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Yaroslav Halchenko <deb...@onerussian.com> (supplier of updated connectome-workbench package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 17 Aug 2021 18:54:41 -0400 Source: connectome-workbench Architecture: source Version: 1.5.0-2 Distribution: unstable Urgency: medium Maintainer: NeuroDebian Team <t...@neuro.debian.net> Changed-By: Yaroslav Halchenko <deb...@onerussian.com> Closes: 984024 Changes: connectome-workbench (1.5.0-2) unstable; urgency=medium . * Include upstream patch https://github.com/Washington-University/workbench/commit/2605e8a98d23d229d54a9e6847ad64f678217ea7.patch to resolve FTBFS with gcc-11 (Closes: #984024) Checksums-Sha1: 065c598f68860fbaddfc96a3c044095f3a026edb 2302 connectome-workbench_1.5.0-2.dsc ed8b9e4224d16479f2cbbe240ce31a099be3ee40 13668 connectome-workbench_1.5.0-2.debian.tar.xz 5056b894daa935c2200107ab104d20d39d4b712c 12327 connectome-workbench_1.5.0-2_source.buildinfo Checksums-Sha256: e338bda9359e56aba5c6f9e958c253487ac3864f8449f8566ae81b5f70cbe69f 2302 connectome-workbench_1.5.0-2.dsc 71ad3e9172c18f65d09f49bdd541230798bf22b40dca4d698dea3c10cabfd20f 13668 connectome-workbench_1.5.0-2.debian.tar.xz 673167a6ec64dbbacf6b4a590b7c6f4e0896a291ab764c74908868460b68d84f 12327 connectome-workbench_1.5.0-2_source.buildinfo Files: 3f0c46f56fbe4c5d9f0b7cf1292f4787 2302 science optional connectome-workbench_1.5.0-2.dsc 36243066c8dab6647a71beedcb68e862 13668 science optional connectome-workbench_1.5.0-2.debian.tar.xz 1c7446694be4090583020af7c034ef73 12327 science optional connectome-workbench_1.5.0-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEExbkF8OjZ/ZZo/zZvot4jUGLaM/oFAmEcPngACgkQot4jUGLa M/q5LxAAw61NBcyGEPBgX19wv7ldfEyIUUe1m1hSuaAyNxJBJBlHXoMqtteQRrhe IqYe4aGgqx/HdmCRX3eY9thHsnZuMVr1ynAFqh3oJa9LnOglAIx4AJRELXloCdof 4dfvavz9NBs97uHKGP0A+GPZZUpEjVqNJDQmc15GeXDw33/aOSSRL5Sxh3cceZN6 R/K2lx5To3+rB2+FrSi1gYdi6T3CtiX+8fXasVR4NLSxuIw47TR6N9WlmMmGeDq5 HhpjrAB87e8LnHgrTlYlFiLBG4sqi5ouYJVYAeVZ9BjaN6/4sWpst5EuoZ9XOaL2 MSSWmEwXYK9Wu5trFE9/+Z2SN418yRfMTUf7Ypji7SdgopEvuLtPWfA2fkbfBP3e gzD2T93fTjy0Nx5tDJJPTZOysaHFIpWnwVqRCCjpFBRVbtp1QHHr0s+rQfymjjtZ iiia21x2cI8KCtXonAjKS51P9UhMbdIFVGWHuuhyXTpSIPi13NJL1da+R0EkWKky tHaJB0ok/3MUY7kIafSkst6crd7P7PkdzRGIw/kA75u1AUH46QejHbw75MobtQuA T4craqndp/UElsKnr6fdTvdd1oWIDtJcbkTyEbosK3Lnddagp36lbbwy75Cw7JGS MDdWRgI+I00lVgHvrkP2l7UAhVdNAvdFDkHedhGPwlPUPvhBtMg= =ABCt -----END PGP SIGNATURE-----
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