Your message dated Tue, 28 Sep 2021 16:08:06 +0000 with message-id <e1mvfei-0006pu...@fasolo.debian.org> and subject line Bug#995150: fixed in openmpi 4.1.2~rc1-3 has caused the Debian Bug report #995150, regarding openmpi: segfault in mca_io_romio_dist_MPI_File_iwrite_all to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 995150: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=995150 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: openmpi Version: 4.1.2~rc1-2 Severity: serious Justification: FTBFS The new version of openmpi seems to be segfaulting in mca_io_romio321.so The segfault is found in nearly all arches in mpi4py tests, https://buildd.debian.org/status/package.php?p=mpi4py (it causes mpi4py to FTBFS) The crash is bad enough that most arches are not able to provide a backtrace, although some arches reference libpthread.so.0 (which could suggest instability from the libc6 2.32 transition) ppc64el and ia64 however provide a full backtrace, both pointing at mca_io_romio321.so (MPIOI_File_iwrite_all) >From ppc64el https://buildd.debian.org/status/fetch.php?pkg=mpi4py&arch=ppc64el&ver=3.1.1-8&stamp=1632692000&raw=0 testIReadIWrite (test_io.TestIOSelf) ... ok testIReadIWriteAll (test_io.TestIOSelf) ... [ppc64el-osuosl-01:1381766] *** Process received signal *** [ppc64el-osuosl-01:1381766] Signal: Segmentation fault (11) [ppc64el-osuosl-01:1381766] Signal code: Address not mapped (1) [ppc64el-osuosl-01:1381766] Failing at address: (nil) [ppc64el-osuosl-01:1381766] [ 0] linux-vdso64.so.1(__kernel_sigtramp_rt64+0x0)[0x7fff92ec0514] [ppc64el-osuosl-01:1381766] [ 1] [0x0] [ppc64el-osuosl-01:1381766] [ 2] /usr/lib/powerpc64le-linux-gnu/openmpi/lib/openmpi3/mca_io_romio321.so(mca_io_romio_dist_MPI_File_iwrite_all+0x38)[0x7fff831135e8] [ppc64el-osuosl-01:1381766] [ 3] /usr/lib/powerpc64le-linux-gnu/openmpi/lib/openmpi3/mca_io_romio321.so(mca_io_romio321_file_iwrite_all+0xa8)[0x7fff831100f8] [ppc64el-osuosl-01:1381766] [ 4] /usr/lib/powerpc64le-linux-gnu/libmpi.so.40(PMPI_File_iwrite_all+0x100)[0x7fff9221e890] [ppc64el-osuosl-01:1381766] [ 5] /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/mpi4py/MPI.cpython-39-powerpc64le-linux-gnu.so(+0x12b654)[0x7fff9245b654] [ppc64el-osuosl-01:1381766] [ 6] /usr/bin/python3.9[0x100f9e84] [ppc64el-osuosl-01:1381766] [ 7] /usr/bin/python3.9(_PyEval_EvalFrameDefault+0xa9c)[0x100d2a6c] [ppc64el-osuosl-01:1381766] [ 8] /usr/bin/python3.9(_PyFunction_Vectorcall+0x20c)[0x100f631c]
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--- Begin Message ---Source: openmpi Source-Version: 4.1.2~rc1-3 Done: Alastair McKinstry <mckins...@debian.org> We believe that the bug you reported is fixed in the latest version of openmpi, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 995...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Alastair McKinstry <mckins...@debian.org> (supplier of updated openmpi package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 28 Sep 2021 08:11:18 +0100 Source: openmpi Architecture: source Version: 4.1.2~rc1-3 Distribution: unstable Urgency: medium Maintainer: Alastair McKinstry <mckins...@debian.org> Changed-By: Alastair McKinstry <mckins...@debian.org> Closes: 995150 Changes: openmpi (4.1.2~rc1-3) unstable; urgency=medium . * Update versions: - libmca_common_ompio.so 41.29.1 -> 41.29.2 - libmca_common_ofi.so 10.0.1 -> 10.0.2 Closes: #995150 * Add autopkg test for unlinked shared libs * Add alpha, ppc64, sparc64 to the 'nojava' arch list * Only install javadocs via d/rules inside conditional Checksums-Sha1: 4a9d09b14cb6889c1d92717a496519833c2a9950 2771 openmpi_4.1.2~rc1-3.dsc 0b32e211bd171989baad1ef3c1e9ab05067da0f3 68460 openmpi_4.1.2~rc1-3.debian.tar.xz Checksums-Sha256: c62370de7ce3d71d329723a214a5b03fc9f2b9ddfa64eceb3b02ab73f14f437d 2771 openmpi_4.1.2~rc1-3.dsc d3e4b00052213e0b95a44add1fc7daa4a9503ad48ba2850ec6e2e421661867cc 68460 openmpi_4.1.2~rc1-3.debian.tar.xz Files: e81fb378b880761388b8737614e0d8ad 2771 net optional openmpi_4.1.2~rc1-3.dsc cdcbfde15c50a31b3bdabb74bc77adcc 68460 net optional openmpi_4.1.2~rc1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEgjg86RZbNHx4cIGiy+a7Tl2a06UFAmFTOb4ACgkQy+a7Tl2a 06V0nhAAomVG6e3Ly6RNM40P7lPE3a6A1kAon+pXpWL66HQ4PBzqBuPnmhT2OnZM vTke2vFpb2+cpOSFvkni/7wuNpfUsjYF1kzvup63UaQoIXW3CDvlBYZ89ZiSeQ+G iNDPi+KCWkHxLAH1cSm3q8QEB9w2D9US7WbGl/PP+xGhz1vT3cUnOW1KEo4owJIV oRtQn7WnikfFgR4s3ASP4GumtzcpnF+hMQeUfw5/gEO8ooq0EFbosvunmqWziSvI UNkAqcg8YcnpHcJ4rnIEgoMMiatEn/0hA6HyvWxn+a4wejSq96nkNAA+8JOkUyWL b6QIbm/15UMFo8AH14YnqPDYC5cnUyR8At1wESN+iaDR1quVVgSLf2bFnkXjfZs1 f9kdYb9mMgxJZtZ8+cb7/7Kw36BbztHvUh3BvJ7FThPLTnhlApMNOdszATpk6RRS b1hWDs6sAixBw0NkQ2yEeVnSW68pF7zTSgKPE4I5hnQIdSrzwSC/8pSz7t4g6oZ1 ue88tGHATdkZ0wVaAxKYYC2xLBMWS1YP4bnfdCx2mIgZCpV7vRHBzajQygWrOCSa qslubxrw0PwnzjnHb2Vk+W9/qDNO1GhL76FCZLmo4kA3+f+urnc3vQ0KNfyrX+v3 H9uY6Wk+Hwlh+nNj5FyvwThqGlAYnCjU5YLURj8Bg+v173jnV+U= =Q2HJ -----END PGP SIGNATURE-----
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