Your message dated Sat, 04 Sep 2021 09:18:32 +0000
with message-id <e1mmrom-0002vr...@fasolo.debian.org>
and subject line Bug#992674: fixed in lmfit-py 1.0.2-1
has caused the Debian Bug report #992674,
regarding scipy breaks lmfit-py autopkgtest
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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992674: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=992674
Debian Bug Tracking System
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--- Begin Message ---
Source: scipy, lmfit-py
Control: found -1 scipy/1.7.1-1
Control: found -1 lmfit-py/1.0.1-6
Severity: serious
Tags: sid bookworm
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload of scipy the autopkgtest of lmfit-py fails in
testing when that autopkgtest is run with the binary packages of scipy
from unstable. It passes when run with only packages from testing. In
tabular form:
pass fail
scipy from testing 1.7.1-1
lmfit-py from testing 1.0.1-6
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of scipy to testing
[1]. Due to the nature of this issue, I filed this bug report against
both packages. Can you please investigate the situation and reassign the
bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=scipy
https://ci.debian.net/data/autopkgtest/testing/amd64/l/lmfit-py/14750990/log.gz
=================================== FAILURES
===================================
___________________________ test_ampgo_local_solver
____________________________
minimizer_Alpine02 = <lmfit.minimizer.Minimizer object at 0x7fe60c347700>
def test_ampgo_local_solver(minimizer_Alpine02):
"""Test AMPGO algorithm with local solver."""
kws = {'local': 'Nelder-Mead'}
msg = r'Method Nelder-Mead cannot handle constraints nor bounds'
with pytest.warns(RuntimeWarning, match=msg):
> out = minimizer_Alpine02.minimize(method='ampgo', **kws)
E Failed: DID NOT WARN. No warnings of type (<class
'RuntimeWarning'>,) was emitted. The list of emitted warnings is: [].
tests/test_ampgo.py:65: Failed
___________________________ test_shgo_scipy_vs_lmfit
___________________________
def test_shgo_scipy_vs_lmfit():
"""Test SHGO algorithm in lmfit versus SciPy."""
bounds = [(-512, 512), (-512, 512)]
result_scipy = scipy.optimize.shgo(eggholder, bounds, n=30,
sampling_method='sobol')
> assert len(result_scipy.xl) == 13
E assert 6 == 13
E + where 6 = len(array([[ 324.99187533, 216.0475439 ],\n
[-105.87688985, 423.15324143],\n [-242.97923629,
274.38032063],\n [-506.25823477, 6.3131022 ],\n [
91.00922754, -391.28375925],\n [-219.40615102, -244.06022436]]))
E + where array([[ 324.99187533, 216.0475439 ],\n
[-105.87688985, 423.15324143],\n [-242.97923629,
274.38032063],\n [-506.25823477, 6.3131022 ],\n [
91.00922754, -391.28375925],\n [-219.40615102, -244.06022436]]) =
fun: -582.3062800548453\n funl: array([-582.30628005,
-565.99778097, -559.78685655, -557.36868733,\n -426....,\n
[-506.25823477, 6.3131022 ],\n [ 91.00922754,
-391.28375925],\n [-219.40615102, -244.06022436]]).xl
tests/test_shgo.py:32: AssertionError
__________________________ test_shgo_scipy_vs_lmfit_2
__________________________
def test_shgo_scipy_vs_lmfit_2():
"""Test SHGO algorithm in lmfit versus SciPy."""
bounds = [(-512, 512), (-512, 512)]
result_scipy = scipy.optimize.shgo(eggholder, bounds, n=60, iters=5,
sampling_method='sobol')
> assert len(result_scipy.xl) == 39
E assert 74 == 39
E + where 74 = len(array([[ 479.0454122 , 434.50588415],\n
[-465.69415426, 385.71669786],\n [ 347.32696865,
499.41539073],\n ...,\n [ -86.07840448, -6.42281733],\n [
47.99461331, -1.55083384],\n [ 31.65189625, -85.22716952]]))
E + where array([[ 479.0454122 , 434.50588415],\n
[-465.69415426, 385.71669786],\n [ 347.32696865,
499.41539073],\n ...,\n [ -86.07840448, -6.42281733],\n [
47.99461331, -1.55083384],\n [ 31.65189625, -85.22716952]]) =
fun: -955.2551521442906\n funl: array([-955.25515214,
-894.57890039, -888.94912527, -821.19646107,\n -821....,\n [
-86.07840448, -6.42281733],\n [ 47.99461331, -1.55083384],\n
[ 31.65189625, -85.22716952]]).xl
tests/test_shgo.py:51: AssertionError
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: lmfit-py
Source-Version: 1.0.2-1
Done: Picca Frédéric-Emmanuel <pi...@debian.org>
We believe that the bug you reported is fixed in the latest version of
lmfit-py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 992...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Picca Frédéric-Emmanuel <pi...@debian.org> (supplier of updated lmfit-py
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 04 Sep 2021 11:00:36 +0200
Source: lmfit-py
Architecture: source
Version: 1.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Picca Frédéric-Emmanuel <pi...@debian.org>
Closes: 992674
Changes:
lmfit-py (1.0.2-1) unstable; urgency=medium
.
* New upstream version 1.0.2
* d/control:
+ Used dh-sequence-X
+ Added Build-Depends python3-sympy <!nodoc>
* d/rules: Simplified thanks to dh-sequence-X
* d/p/0003-upstream-fix-for-scipy-1.7.0.patch
* Bug fix: "scipy breaks lmfit-py autopkgtest", thanks to Paul Gevers
(Closes: #992674).
* Bump debhelper from old 12 to 13.
* Update standards version to 4.5.1, no changes needed.
* Apply multi-arch hints.
+ python-lmfit-doc: Add Multi-Arch: foreign.
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lmfit-py_1.0.2.orig.tar.gz
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