Your message dated Sat, 28 Aug 2021 19:49:41 +0000 with message-id <e1mk4kj-000am6...@fasolo.debian.org> and subject line Bug#978843: fixed in jellyfish 2.3.0-11 has caused the Debian Bug report #978843, regarding jellyfish: ftbfs with autoconf 2.70 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 978843: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978843 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:jellyfish Version: 2.3.0-6 Severity: normal Tags: sid bookworm User: d...@debian.org Usertags: ftbfs-ac270 [This bug report is not targeted to the upcoming bullseye release] The package fails to build in a test rebuild on at least amd64 with autoconf 2.70, but succeeds to build with autoconf 2.69. The severity of this report will be raised before the bookworm release, so nothing has to be done for the bullseye release. The full build log can be found at: http://qa-logs.debian.net/2020/09/26.ac270/jellyfish_2.3.0-6_unstable_ac270.log The last lines of the build log are at the end of this report. To build with autoconf 2.70, please install the autoconf package from experimental: apt-get -t=experimental install autoconf [...] am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='x86_64-linux-gnu' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${prefix}/share/info' install_sh='${SHELL} /<<PKGBUILDDIR>>/install-sh' libdir='${prefix}/lib/x86_64-linux-gnu' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='/var' mandir='${prefix}/share/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr' program_transform_name='s,x,x,' psdir='${docdir}' runstatedir='/run' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "jellyfish" #define PACKAGE_TARNAME "jellyfish" #define PACKAGE_VERSION "2.3.0" #define PACKAGE_STRING "jellyfish 2.3.0" #define PACKAGE_BUGREPORT "gmarc...@umd.edu" #define PACKAGE_URL "" #define PACKAGE "jellyfish" #define VERSION "2.3.0" #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define STDC_HEADERS 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_HTSLIB 1 configure: exit 2 dh_auto_configure: error: ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-swig --enable-perl-binding --enable-htslib --enable-python-binding PYTHON=/usr/bin/python3 returned exit code 2 make[1]: *** [debian/rules:50: override_dh_auto_configure] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:21: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---Source: jellyfish Source-Version: 2.3.0-11 Done: Étienne Mollier <emoll...@debian.org> We believe that the bug you reported is fixed in the latest version of jellyfish, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 978...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <emoll...@debian.org> (supplier of updated jellyfish package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 28 Aug 2021 21:01:20 +0200 Source: jellyfish Architecture: source Version: 2.3.0-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <emoll...@debian.org> Closes: 978843 983273 Changes: jellyfish (2.3.0-11) unstable; urgency=medium . [ Andreas Tille ] * Fix Homepage Closes: #983273 . [ Étienne Mollier ] * d/watch: repair broken link to github * add fix-autoreconf.patch; fix ftbfs with autoreconf 2.70 (Closes: #978843) * Standards-Version: 4.6.0 (routine-update) * Apply multi-arch hints. + libjellyfish-2.0-dev: Drop Multi-Arch: same. + jellyfish-examples: Add Multi-Arch: foreign. * d/control: add myself to uploaders Checksums-Sha1: 0e681f349c5b26bac3b7bf4f257d79997b18936c 3210 jellyfish_2.3.0-11.dsc 0a97b508c5c716f03e27bba3d9f9ff71b476776b 14780 jellyfish_2.3.0-11.debian.tar.xz 339e3fdec717e3ad4a388248ecfeaf01db4391b4 10817 jellyfish_2.3.0-11_amd64.buildinfo Checksums-Sha256: 23c7c1fb89038c73b12a99d10adf2a3470160efa22809b850ad95bc38fbb6e25 3210 jellyfish_2.3.0-11.dsc 3eddde5f1b236128a3c206377d825efdb7bf1c5d7d152ca1304c9d94f086dc1e 14780 jellyfish_2.3.0-11.debian.tar.xz d18ba7f867ba879c8f808d86fa6557dc46c5a68b217210888b3b7767e192e0b9 10817 jellyfish_2.3.0-11_amd64.buildinfo Files: dec071aadda93b619c5e578749bda40a 3210 science optional jellyfish_2.3.0-11.dsc 7c4165947db5a1ed33cd18dd9952827d 14780 science optional jellyfish_2.3.0-11.debian.tar.xz 7d9dcebc7b0b1741dcfb7c78bd582681 10817 science optional jellyfish_2.3.0-11_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmEqj9sUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoVqA//Y/yZRbmBKm/kiMSnp7+nLYbVJrnk ZOk9ClQ0v3lO+Ou3wMKOD8t+qLzmi/2xw3E8ReFqQ3Xw0cow8nJYxF783QsyCqRS MEbDBgmAtZPFKnXegTu8rHP09vOSA1CJ24dEopwETSDMPlLGIoEsI/vFNKKAmHeW dtALJyXI2DQUCrf7AvfMEAiV6j/f3i2igL3OVh7wWM5G+js5dattRw8ZnD1hIxz3 NwY0cCGsjSk1L0wt7lNj4SxQijR4p3bMehiOQVYvRnwN5ei+oXOi7D/uQOPF4/FV O/QLNNRyMAaVrM4eNOSTZM+ElhopSbNRHxWZuVsnBjlmGzxPyic2XVvYnFcC2EWl R/UtCg09yCwnstmHUlWPgpCz+/rBXRxAPpwrAWYQK9fQS4jJegvy5Dh/sh2NLmbX NavlI3yzW5VqTCmbfsn3G+/iFX41JL3OxmM0kOOhLtgImhFJCDPgEfk9stx8Rs5Q M45t4ucDhagaAdyaJ72oq0ZWjcxhyWZTEWNN1lAMkNeiGAIAE5zODmRt6v6ajY7f XJnzdJ0MqTEBteFfv1g+DJsvXkWb41uCWABf5D6j84HF5+jC8pE6fEiOXCyuLyFD t6oHDtAydQRhORPz0hXyx/Atpj8lt7Z3iBVd4N+Nx3dwaT0iKTv5jRA7knSQkWtG IstHQ+x9RX/uJPU= =4ahB -----END PGP SIGNATURE-----
--- End Message ---
