Your message dated Wed, 25 Aug 2021 01:23:54 +0530
with message-id <YSVOUgjV77BA9SDv@debian>
and subject line Re: clustalw: ftbfs with autoconf 2.70
has caused the Debian Bug report #978784,
regarding clustalw: ftbfs with autoconf 2.70
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
978784: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978784
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:clustalw
Version: 2.1+lgpl-6
Severity: normal
Tags: sid bookworm
User: d...@debian.org
Usertags: ftbfs-ac270
[This bug report is not targeted to the upcoming bullseye release]
The package fails to build in a test rebuild on at least amd64 with
autoconf 2.70, but succeeds to build with autoconf 2.69. The
severity of this report will be raised before the bookworm release,
so nothing has to be done for the bullseye release.
The full build log can be found at:
http://qa-logs.debian.net/2020/09/26.ac270/clustalw_2.1+lgpl-6_unstable_ac270.log
The last lines of the build log are at the end of this report.
To build with autoconf 2.70, please install the autoconf package from
experimental: apt-get -t=experimental install autoconf
[...]
|
^~~~~~~~~~~~~~
./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO
C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
97 | void printVectorToFile(vector<short>& temp, char* name =
"tempfile.out");
|
^~~~~~~~~~~~~~
In file included from
./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8,
from ./pairwise/../alignment/Alignment.h:42,
from ./pairwise/PairwiseAlignBase.h:10,
from ./pairwise/FastPairwiseAlign.h:9,
from ./pairwise/FastPairwiseAlign.cpp:10:
./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO
C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
96 | void printInFormat(vector<short>& temp, char* name =
"tempfile.out");
|
^~~~~~~~~~~~~~
./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO
C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
97 | void printVectorToFile(vector<short>& temp, char* name =
"tempfile.out");
|
^~~~~~~~~~~~~~
In file included from
./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8,
from ./fileInput/../alignment/Alignment.h:42,
from ./fileInput/FileReader.h:12,
from ./fileInput/FileReader.cpp:29:
./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO
C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
96 | void printInFormat(vector<short>& temp, char* name =
"tempfile.out");
|
^~~~~~~~~~~~~~
./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO
C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
97 | void printVectorToFile(vector<short>& temp, char* name =
"tempfile.out");
|
^~~~~~~~~~~~~~
In file included from ./fileInput/FileReader.cpp:29:
./fileInput/FileReader.h:42:38: warning: ‘template<class> class std::auto_ptr’
is deprecated [-Wdeprecated-declarations]
42 | void checkInfile(int* nseqs, auto_ptr<FileParser>& fileParser);
| ^~~~~~~~
In file included from /usr/include/c++/10/memory:83,
from ./fileInput/FileReader.h:11,
from ./fileInput/FileReader.cpp:29:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
./fileInput/FileReader.cpp: In member function ‘int
clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::string*)’:
./fileInput/FileReader.cpp:155:5: warning: ‘template<class> class
std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
155 | auto_ptr<FileParser> fileParser; // Means we dont need to delete it!
| ^~~~~~~~
In file included from /usr/include/c++/10/memory:83,
from ./fileInput/FileReader.h:11,
from ./fileInput/FileReader.cpp:29:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
./fileInput/FileReader.cpp: At global scope:
./fileInput/FileReader.cpp:426:42: warning: ‘template<class> class
std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
426 | void FileReader::checkInfile(int *nseqs, auto_ptr<FileParser>&
fileParser)
| ^~~~~~~~
In file included from /usr/include/c++/10/memory:83,
from ./fileInput/FileReader.h:11,
from ./fileInput/FileReader.cpp:29:
/usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
make[4]: *** [Makefile:696: FullPairwiseAlign.o] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: *** [Makefile:710: FastPairwiseAlign.o] Error 1
make[4]: *** [Makefile:724: MSFFileParser.o] Error 1
make[4]: *** [Makefile:738: FileReader.o] Error 1
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[3]: *** [Makefile:1412: all-recursive] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: *** [Makefile:516: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: *** [Makefile:364: all-recursive] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j4 returned exit code 2
make: *** [debian/rules:6: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Works fine, closing.
cf: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978794#19
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--- End Message ---