Source: cd-hit Version: 4.8.1-3 Severity: serious X-Debbugs-CC: debian...@lists.debian.org Tags: sid bookworm User: debian...@lists.debian.org Control: affects -1 src:perl
Dear maintainer(s), With a recent upload of perl the autopkgtest of cd-hit fails in testing on armhf when that autopkgtest is run with the binary packages of perl from unstable. Unlike usually, this is not a *regression* from the package point of view, but the result of a change of the workers showing that the current defaults in the test are too low for some of our workers. I copied some of the output at the bottom of this report. It's ironical that cd-hit complains about not enough memory when the worker this test runs on has the biggest amount of memory we have in the ci.d.n worker park: 250GB. If I read the output correctly, you assign the amount of memory cd-hit is allowed to use and the required amount of memory also depends on the amount of cores. This machine has 160 cores. I wonder if the value for -M needs to be calculated instead of hard coded or that you should limit the maximum amount of cores used or... But I leave it up to you to find the appropriate solution. Paul https://ci.debian.net/data/autopkgtest/testing/amd64/c/cd-hit/14380008/log.gz autopkgtest [03:24:50]: test run-unit-test: [----------------------- ==== CD_HIT ==== ================================================================ Program: CD-HIT, V4.8.1 (+OpenMP), Nov 21 2020, 19:27:41 Command: cd-hit -i example.fa -o out -c 1.00 -n 5 -M 1000 -T 0 Started: Tue Aug 10 03:24:50 2021 ================================================================ Output ---------------------------------------------------------------- total number of CPUs in the system is 160 Actual number of CPUs to be used: 160 total seq: 4 longest and shortest : 1132 and 149 Total letters: 2136 Sequences have been sorted Approximated minimal memory consumption: Sequence : 0M Buffer : 160 X 10M = 1715M Table : 2 X 49M = 98M Miscellaneous : 0M Total : 1813M Fatal Error: not enough memory, please set -M option greater than 1913 Program halted !! autopkgtest [03:24:51]: test run-unit-test: -----------------------]
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