Hi Andreas On 2021-06-03 01:41:37 +0200, Andreas Beckmann wrote: > On 02/06/2021 22.22, Sebastian Ramacher wrote: > > So, what if we use the free versions between 103 and 200 to transition > > to a Debian-specific version? Attached is a patch that does that. It's > > not an optimal solution as we would have a release with a > > Debian-specific SOVERSIONs. For good reason, we usually try to avoid > > those. So, it would be good for someone more familiar with the users of > > hdf5 to check if that would be an issue in this specific case. > > Can we be even more explicit about that and use a SOVERSION like "106deb" ? > That might be a bit tricky with libtool, though.
Unless somebody knows how to do that with libtool, 103deb or something
similar won't work.
> I think you should only remove Conflicts/Replaces on libhdf5*-103 and
> leave all other there. (Have they been in buster already?)
>
> You definitively want to have a
> Breaks: libhdf5-foo-10x(-1)
> in each libhdf5-foo-106 package as we don't want to mix the current
> bullseye packages with your proposed packages
Why though? Adding this Breaks will require us to do a lock step
transition. At this stage of the freeze, I don't want one potential
build failure holding hdf5 back from transitioning to bullseye.
Unless there is a really good reason why they'd be needed, let's avoid
them.
> Wouldn't it be sufficient to rename only the packages where the
> soversion is the same in buster and bullseye?
Yes, but I didn't have this table at hand and some of those SOVERSIONs
are still derived from the same version. For example, all
.*hl_fortran.so have the same SOVERSION.
> I'll try to make a table:
>
> library buster
> bullseye proposed soversion
>
> libhdf5_serial.so.103 libhdf5-103 libhdf5-103-1
> 103deb or 106
> libhdf5_serial_fortran.so.100 libhdf5-103 n/a
> -
> libhdf5_serial_fortran.so.102 n/a
> libhdf5-fortran-102 keep
> libhdf5_serial_hl.so.100 libhdf5-103 libhdf5-hl-100
> 100deb or 106
> libhdf5_serialhl_fortran.so.100 libhdf5-103
> libhdf5-hl-fortran-100 100deb or 106
>
> libhdf5_cpp.so.103 libhdf5-cpp-103
> libhdf5-cpp-103-1 103deb or 106
> libhdf5_hl_cpp.so.100 libhdf5-cpp-103
> libhdf5-hl-cpp-100 100deb or 106
>
> libhdf5_mpich.so.103 libhdf5-mpich-103
> libhdf5-mpich-103-1 103deb or 106
> libhdf5_mpich_fortran.so.100 libhdf5-mpich-103 n/a
> -
> libhdf5_mpich_fortran.so.102 n/a
> libhdf5-mpich-fortran-102 keep
> libhdf5_mpich_hl.so.100 libhdf5-mpich-103
> libhdf5-mpich-hl-100 100deb or 106
> libhdf5_mpichhl_fortran.so.100 libhdf5-mpich-103
> libhdf5-mpich-hl-cpp-100 100deb or 106
>
> libhdf5_mpich_cpp.so.103 n/a
> libhdf5-mpich-cpp-103-1 keep or 103
> libhdf5_mpich_hl_cpp.so.100 n/a
> libhdf5-mpich-hl-cpp-100 keep
>
> libhdf5_openmpi.so.103 libhdf5-openmpi-103
> libhdf5-openmpi-103-1 103deb or 106
> libhdf5_openmpi_fortran.so.100 libhdf5-openmpi-103 n/a
> -
> libhdf5_openmpi_fortran.so.102 n/a
> libhdf5-openmpi-fortran-102 keep
> libhdf5_openmpi_hl.so.100 libhdf5-openmpi-103
> libhdf5-openmpi-hl-100 100deb
> libhdf5_openmpihl_fortran.so.100 libhdf5-openmpi-103
> libhdf5-openmpi-hl-fortran-100 100deb
>
> libhdf5_openmpi_cpp.so.103 n/a
> libhdf5-openmpi-cpp-103-1 keep or 103
> libhdf5_openmpi_hl_cpp.so.100 n/a
> libhdf5-openmpi-hl-cpp-100 keep
libhdf5_{serial,mpich,openmpi}_fortran.so.102 can be kept. All the
others can't. Updated patch attached (also with the changes to TOOLS and
JAVA revertred as are not relevant).
> Well, having different sonames for libhdf5_cpp.so and libhdf5_*mpi*_cpp.so
> might be difficult and non-intuitive.
… it's also not possible without touching more parts of the buidl system.
> But at least you don't have to touch libhdf5*-fortran-102 ;-)
>
>
> BUT: This would still only solve the co-installability mess of hdf5,
> the gdal problem is still there.
One step after the other :)
Cheers
--
Sebastian Ramacher
diff -Nru hdf5-1.10.6+repack/debian/changelog hdf5-1.10.6+repack/debian/changelog --- hdf5-1.10.6+repack/debian/changelog 2020-04-24 20:00:42.000000000 +0200 +++ hdf5-1.10.6+repack/debian/changelog 2021-06-02 21:33:00.000000000 +0200 @@ -1,3 +1,12 @@ +hdf5 (1.10.6+repack-2.1) unstable; urgency=medium + + * Non-maintainer upload. + * Bump SONAME to Debian specific version (106) + This is a workaround for upgrade issues caused by libhdf5-103 (in buster) + and libhdf5-103-1 (in bullseye) not being co-installable. (Closes: #988722) + + -- Sebastian Ramacher <sramac...@debian.org> Wed, 02 Jun 2021 21:33:00 +0200 + hdf5 (1.10.6+repack-2) unstable; urgency=medium * Default plugindir per flavor diff -Nru hdf5-1.10.6+repack/debian/control hdf5-1.10.6+repack/debian/control --- hdf5-1.10.6+repack/debian/control 2020-04-24 20:00:42.000000000 +0200 +++ hdf5-1.10.6+repack/debian/control 2021-06-02 21:33:00.000000000 +0200 @@ -21,15 +21,13 @@ Vcs-Git: https://salsa.debian.org/debian/hdf5.git Homepage: http://hdfgroup.org/HDF5/ -Package: libhdf5-103-1 +Package: libhdf5-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Breaks: libhdf5-103 -Replaces: libhdf5-103 Description: HDF5 C runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -53,15 +51,13 @@ . This package contains the Fortran runtime files for serial platforms. -Package: libhdf5-hl-100 +Package: libhdf5-hl-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-100, libhdf5-101, libhdf5-102, libhdf5-103 (<< 1.10.5) -replaces: libhdf5-100, libhdf5-101, libhdf5-102, libhdf5-103 (<< 1.10.5) Description: HDF5 High Level runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -70,15 +66,13 @@ . This package contains the high level C API runtime files for serial platforms. -Package: libhdf5-hl-fortran-100 +Package: libhdf5-hl-fortran-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-100, libhdf5-101, libhdf5-102, libhdf5-103 (<< 1.10.5) -replaces: libhdf5-100, libhdf5-101, libhdf5-102, libhdf5-103 (<< 1.10.5) Description: HDF5 High Level Fortran runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -88,14 +82,12 @@ This package contains the high level Fortran API runtime files for serial platforms. -Package: libhdf5-cpp-103-1 +Package: libhdf5-cpp-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} -Breaks: libhdf5-cpp-103 -Replaces: libhdf5-cpp-103 Description: HDF5 - C++ runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -104,15 +96,13 @@ . This package contains the C++ runtime files for serial platforms. -Package: libhdf5-hl-cpp-100 +Package: libhdf5-hl-cpp-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) -Replaces: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) Description: HDF5 High Level C++ runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -125,12 +115,12 @@ Package: libhdf5-dev Architecture: any Section: libdevel -Depends: libhdf5-103-1 (= ${binary:Version}), +Depends: libhdf5-106 (= ${binary:Version}), libhdf5-fortran-102 (= ${binary:Version}), - libhdf5-hl-100 (= ${binary:Version}), - libhdf5-hl-fortran-100 (= ${binary:Version}), - libhdf5-cpp-103-1 (= ${binary:Version}), - libhdf5-hl-cpp-100 (= ${binary:Version}), + libhdf5-hl-106 (= ${binary:Version}), + libhdf5-hl-fortran-106 (= ${binary:Version}), + libhdf5-cpp-106 (= ${binary:Version}), + libhdf5-hl-cpp-106 (= ${binary:Version}), zlib1g-dev, libjpeg-dev, libaec-dev, @@ -148,15 +138,13 @@ . This package contains development files for serial platforms. -Package: libhdf5-openmpi-103-1 +Package: libhdf5-openmpi-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Breaks: libhdf5-openmpi-103 -Replaces: libhdf5-openmpi-103 Description: HDF5 - C runtime files - OpenMPI version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -180,15 +168,13 @@ . This package contains the Fortran runtime files for openmpi platforms. -Package: libhdf5-openmpi-hl-100 +Package: libhdf5-openmpi-hl-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-openmpi-100, libhdf5-openmpi-101, libhdf5-openmpi-102, libhdf5-openmpi-103 (<< 1.10.5) -replaces: libhdf5-openmpi-100, libhdf5-openmpi-101, libhdf5-openmpi-102, libhdf5-openmpi-103 (<< 1.10.5) Description: HDF5 High Level runtime files - OpenMPI version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -197,15 +183,13 @@ . This package contains the high level C API runtime files for openmpi platforms. -Package: libhdf5-openmpi-hl-fortran-100 +Package: libhdf5-openmpi-hl-fortran-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-openmpi-100, libhdf5-openmpi-101, libhdf5-openmpi-102, libhdf5-openmpi-103 (<< 1.10.5) -replaces: libhdf5-openmpi-100, libhdf5-openmpi-101, libhdf5-openmpi-102, libhdf5-openmpi-103 (<< 1.10.5) Description: HDF5 High Level Fortran runtime files - OpenMPI version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -215,14 +199,12 @@ This package contains the high level Fortran API runtime files for openmpi platforms. -Package: libhdf5-openmpi-cpp-103-1 +Package: libhdf5-openmpi-cpp-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} -Breaks: libhdf5-openmpi-cpp-103 -Replaces: libhdf5-openmpi-cpp-103 Description: HDF5 - C++ runtime files - OpenMPI version - unsupported Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -234,15 +216,13 @@ Warning: C++ with parallel HDF5 is not supported upstream. Use this feature at your own risks. -Package: libhdf5-openmpi-hl-cpp-100 +Package: libhdf5-openmpi-hl-cpp-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) -Replaces: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) Description: HDF5 High Level C++ runtime files - OpenMPI version - unsupported Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -258,12 +238,12 @@ Package: libhdf5-openmpi-dev Architecture: any Section: libdevel -Depends: libhdf5-openmpi-103-1 (= ${binary:Version}), +Depends: libhdf5-openmpi-106 (= ${binary:Version}), libhdf5-openmpi-fortran-102 (= ${binary:Version}), - libhdf5-openmpi-hl-100 (= ${binary:Version}), - libhdf5-openmpi-hl-fortran-100 (= ${binary:Version}), - libhdf5-openmpi-cpp-103-1 (= ${binary:Version}), - libhdf5-openmpi-hl-cpp-100 (= ${binary:Version}), + libhdf5-openmpi-hl-106 (= ${binary:Version}), + libhdf5-openmpi-hl-fortran-106 (= ${binary:Version}), + libhdf5-openmpi-cpp-106 (= ${binary:Version}), + libhdf5-openmpi-hl-cpp-106 (= ${binary:Version}), zlib1g-dev, libaec-dev, libjpeg-dev, @@ -279,15 +259,13 @@ . This package contains development files for use with OpenMPI. -Package: libhdf5-mpich-103-1 +Package: libhdf5-mpich-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Breaks: libhdf5-mpich-103 -Replaces: libhdf5-mpich-103 Description: HDF5 - C runtime files - MPICH2 version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -311,15 +289,13 @@ . This package contains the Fortran runtime files for mpich platforms. -Package: libhdf5-mpich-hl-100 +Package: libhdf5-mpich-hl-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-mpich-100, libhdf5-mpich-101, libhdf5-mpich-102, libhdf5-mpich-103 (<< 1.10.5) -replaces: libhdf5-mpich-100, libhdf5-mpich-101, libhdf5-mpich-102, libhdf5-mpich-103 (<< 1.10.5) Description: HDF5 High Level runtime files - MPICH2 version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -328,15 +304,13 @@ . This package contains the high level C API runtime files for mpich platforms. -Package: libhdf5-mpich-hl-fortran-100 +Package: libhdf5-mpich-hl-fortran-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-mpich-100, libhdf5-mpich-101, libhdf5-mpich-102, libhdf5-mpich-103 (<< 1.10.5) -replaces: libhdf5-mpich-100, libhdf5-mpich-101, libhdf5-mpich-102, libhdf5-mpich-103 (<< 1.10.5) Description: HDF5 High Level Fortran runtime files - MPICH2 version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -346,14 +320,12 @@ This package contains the high level Fortran API runtime files for mpich platforms. -Package: libhdf5-mpich-cpp-103-1 +Package: libhdf5-mpich-cpp-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} -Breaks: libhdf5-mpich-cpp-103 -Replaces: libhdf5-mpich-cpp-103 Description: HDF5 - C++ runtime files - MPICH2 version - unsupported Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -365,15 +337,13 @@ Warning: C++ with parallel HDF5 is not supported upstream. Use this feature at your own risks. -Package: libhdf5-mpich-hl-cpp-100 +Package: libhdf5-mpich-hl-cpp-106 Architecture: any Multi-Arch: same Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) -Replaces: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) Description: HDF5 High Level C++ runtime files - MPICH2 version - unsupported Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -389,12 +359,12 @@ Package: libhdf5-mpich-dev Architecture: any Section: libdevel -Depends: libhdf5-mpich-103-1 (= ${binary:Version}), +Depends: libhdf5-mpich-106 (= ${binary:Version}), libhdf5-mpich-fortran-102 (= ${binary:Version}), - libhdf5-mpich-hl-100 (= ${binary:Version}), - libhdf5-mpich-hl-fortran-100 (= ${binary:Version}), - libhdf5-mpich-cpp-103-1 (= ${binary:Version}), - libhdf5-mpich-hl-cpp-100 (= ${binary:Version}), + libhdf5-mpich-hl-106 (= ${binary:Version}), + libhdf5-mpich-hl-fortran-106 (= ${binary:Version}), + libhdf5-mpich-cpp-106 (= ${binary:Version}), + libhdf5-mpich-hl-cpp-106 (= ${binary:Version}), zlib1g-dev, libaec-dev, libjpeg-dev, diff -Nru hdf5-1.10.6+repack/debian/control.in hdf5-1.10.6+repack/debian/control.in --- hdf5-1.10.6+repack/debian/control.in 2020-04-24 19:10:36.000000000 +0200 +++ hdf5-1.10.6+repack/debian/control.in 2021-05-30 20:41:49.000000000 +0200 @@ -28,8 +28,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Breaks: libhdf5-@SONAME@ -Replaces: libhdf5-@SONAME@ Description: HDF5 C runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -60,8 +58,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-100, libhdf5-101, libhdf5-102, libhdf5-103 (<< 1.10.5) -replaces: libhdf5-100, libhdf5-101, libhdf5-102, libhdf5-103 (<< 1.10.5) Description: HDF5 High Level runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -77,8 +73,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-100, libhdf5-101, libhdf5-102, libhdf5-103 (<< 1.10.5) -replaces: libhdf5-100, libhdf5-101, libhdf5-102, libhdf5-103 (<< 1.10.5) Description: HDF5 High Level Fortran runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -94,8 +88,6 @@ Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} -Breaks: libhdf5-cpp-@SONAME_CXX@ -Replaces: libhdf5-cpp-@SONAME_CXX@ Description: HDF5 - C++ runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -111,8 +103,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) -Replaces: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) Description: HDF5 High Level C++ runtime files - serial version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -155,8 +145,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Breaks: libhdf5-openmpi-@SONAME@ -Replaces: libhdf5-openmpi-@SONAME@ Description: HDF5 - C runtime files - OpenMPI version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -187,8 +175,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-openmpi-100, libhdf5-openmpi-101, libhdf5-openmpi-102, libhdf5-openmpi-103 (<< 1.10.5) -replaces: libhdf5-openmpi-100, libhdf5-openmpi-101, libhdf5-openmpi-102, libhdf5-openmpi-103 (<< 1.10.5) Description: HDF5 High Level runtime files - OpenMPI version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -204,8 +190,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-openmpi-100, libhdf5-openmpi-101, libhdf5-openmpi-102, libhdf5-openmpi-103 (<< 1.10.5) -replaces: libhdf5-openmpi-100, libhdf5-openmpi-101, libhdf5-openmpi-102, libhdf5-openmpi-103 (<< 1.10.5) Description: HDF5 High Level Fortran runtime files - OpenMPI version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -221,8 +205,6 @@ Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} -Breaks: libhdf5-openmpi-cpp-@SONAME_CXX@ -Replaces: libhdf5-openmpi-cpp-@SONAME_CXX@ Description: HDF5 - C++ runtime files - OpenMPI version - unsupported Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -241,8 +223,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) -Replaces: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) Description: HDF5 High Level C++ runtime files - OpenMPI version - unsupported Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -286,8 +266,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Breaks: libhdf5-mpich-@SONAME@ -Replaces: libhdf5-mpich-@SONAME@ Description: HDF5 - C runtime files - MPICH2 version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -318,8 +296,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-mpich-100, libhdf5-mpich-101, libhdf5-mpich-102, libhdf5-mpich-103 (<< 1.10.5) -replaces: libhdf5-mpich-100, libhdf5-mpich-101, libhdf5-mpich-102, libhdf5-mpich-103 (<< 1.10.5) Description: HDF5 High Level runtime files - MPICH2 version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -335,8 +311,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-mpich-100, libhdf5-mpich-101, libhdf5-mpich-102, libhdf5-mpich-103 (<< 1.10.5) -replaces: libhdf5-mpich-100, libhdf5-mpich-101, libhdf5-mpich-102, libhdf5-mpich-103 (<< 1.10.5) Description: HDF5 High Level Fortran runtime files - MPICH2 version Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -352,8 +326,6 @@ Section: libs Depends: ${shlibs:Depends}, ${misc:Depends} -Breaks: libhdf5-mpich-cpp-@SONAME_CXX@ -Replaces: libhdf5-mpich-cpp-@SONAME_CXX@ Description: HDF5 - C++ runtime files - MPICH2 version - unsupported Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address @@ -372,8 +344,6 @@ Depends: ${shlibs:Depends}, ${misc:Depends} Pre-Depends: ${misc:Pre-Depends} -Conflicts: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) -Replaces: libhdf5-cpp-100, libhdf5-cpp-101, libhdf5-cpp-102, libhdf5-cpp-103 (<< 1.10.5) Description: HDF5 High Level C++ runtime files - MPICH2 version - unsupported Hierarchical Data Format 5 (HDF5) is a file format and library for storing scientific data. HDF5 was designed and implemented to address diff -Nru hdf5-1.10.6+repack/debian/patches/bump-soname.patch hdf5-1.10.6+repack/debian/patches/bump-soname.patch --- hdf5-1.10.6+repack/debian/patches/bump-soname.patch 1970-01-01 01:00:00.000000000 +0100 +++ hdf5-1.10.6+repack/debian/patches/bump-soname.patch 2021-06-02 21:33:00.000000000 +0200 @@ -0,0 +1,71 @@ +Description: Bump SONAME as if there was a SONAME bump + In the 1.10.x series, the SOVERSIONs started of at 100 for all libraries + and the different libraries were bundled in a small set of binary + packages. As new versions were released, the SOVERSIONs were no longer + synced, causing the libraries to have out-of-sync SOVERSIONs. This + caused libhdf5-103 to include libhdf5_serial.so.103, + libhdf5_serial_fortran.so.100, libhdf5_serial_hl.so.100, and + libhdf5_serialhl_fortran.so.100. + . + The transition to libhdf5-103-1 tried to fix the situation by moving + all libraries to separate binary packages that have appropriate + Breaks+Replaces relations. Since libhdf-103 is in buster and libhdf-103 + and libhdf-103-1 are not co-installabe, the transition has to be + performed in lock step. Unfortunately, this causes upgrade issues like + #988722 which render upgrades of postgis clusters impossible. + . + As a workaround, we bump all SOVERSIONs to a Debian-specific version + (106) which was not used before in Debian. Note that the next upstream + release (1.12) bumps all of them to 200 and the patch can simply be + removed when transitiong to the 1.12 series. + +--- a/config/lt_vers.am ++++ b/config/lt_vers.am +@@ -16,9 +16,9 @@ + ## See libtool versioning documentation online. + ## After making changes, run bin/reconfigure to update other configure related + ## files like Makefile.in. +-LT_VERS_INTERFACE = 105 ++LT_VERS_INTERFACE = 106 + LT_VERS_REVISION = 0 +-LT_VERS_AGE = 2 ++LT_VERS_AGE = 0 + + ## If the API changes *at all*, increment LT_VERS_INTERFACE and + ## reset LT_VERS_REVISION to 0. +@@ -39,24 +39,24 @@ + ## the effects of the H5_V1_x_COMPAT flag. + ## + ## Version numbers for wrapper shared library files. +-LT_CXX_VERS_INTERFACE = 105 ++LT_CXX_VERS_INTERFACE = 106 + LT_CXX_VERS_REVISION = 0 +-LT_CXX_VERS_AGE = 2 ++LT_CXX_VERS_AGE = 0 + + LT_F_VERS_INTERFACE = 102 + LT_F_VERS_REVISION = 1 + LT_F_VERS_AGE = 0 + +-LT_HL_VERS_INTERFACE = 101 +-LT_HL_VERS_REVISION = 3 +-LT_HL_VERS_AGE = 1 +- +-LT_HL_CXX_VERS_INTERFACE = 101 +-LT_HL_CXX_VERS_REVISION = 4 +-LT_HL_CXX_VERS_AGE = 1 ++LT_HL_VERS_INTERFACE = 106 ++LT_HL_VERS_REVISION = 0 ++LT_HL_VERS_AGE = 0 ++ ++LT_HL_CXX_VERS_INTERFACE = 106 ++LT_HL_CXX_VERS_REVISION = 0 ++LT_HL_CXX_VERS_AGE = 0 + +-LT_HL_F_VERS_INTERFACE = 100 +-LT_HL_F_VERS_REVISION = 5 ++LT_HL_F_VERS_INTERFACE = 106 ++LT_HL_F_VERS_REVISION = 0 + LT_HL_F_VERS_AGE = 0 + + LT_JAVA_VERS_INTERFACE = 104 diff -Nru hdf5-1.10.6+repack/debian/patches/series hdf5-1.10.6+repack/debian/patches/series --- hdf5-1.10.6+repack/debian/patches/series 2020-04-24 19:10:36.000000000 +0200 +++ hdf5-1.10.6+repack/debian/patches/series 2021-05-30 19:19:13.000000000 +0200 @@ -4,3 +4,4 @@ relax-version-check.patch fix-unaligned-accesses.patch reproducibility.patch +bump-soname.patch diff -Nru hdf5-1.10.6+repack/debian/rules hdf5-1.10.6+repack/debian/rules --- hdf5-1.10.6+repack/debian/rules 2020-04-24 19:19:54.000000000 +0200 +++ hdf5-1.10.6+repack/debian/rules 2021-05-30 19:19:57.000000000 +0200 @@ -14,7 +14,7 @@ libversion ?= $(shell echo $(pkgversion) | sed -r 's/^([0-9\.]*)([-~][^-~+]*)?(\+repack[0-9]*)?-[^-]*$$/\1/') # Pkg name extension to force transition -EXT := -1 +EXT := # BEGIN - Get sonames from config/lt_vers.am include config/lt_vers.am
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