Your message dated Fri, 26 Mar 2021 23:48:37 +0000 with message-id <e1lpwbx-00058m...@fasolo.debian.org> and subject line Bug#983404: fixed in scipy 1.6.2-1 has caused the Debian Bug report #983404, regarding python3-scipy: scipy 1.6.1 changed API for sparse (COO) matrices to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 983404: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=983404 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: python3-scipy Version: 1.6.1-1 Severity: serious Tags: upstream Justification: FTBFS Control: forwarded -1 https://github.com/scipy/scipy/issues/13585 Control: affects -1 src:pandas src:qutip scipy 1.6.1 marketed itself as "bug-fix only", but in fact introduced a change in the API handling sparse matrices with COO constructor. Reported upstream at https://github.com/scipy/scipy/issues/13585 with PR proposed at https://github.com/scipy/scipy/pull/13586 This causes pandas and qutip test to fail, so treating as FTBFS (severity serious). scipy 1.6.1 is not fit for bullseye. The signature of the problem is error messages concerning discrepancy dtyped of COO matrices e.g. * pandas (pandas.tests.arrays.sparse.test_array.TestAccessor.test_from_coo): index = pd.MultiIndex.from_arrays([[0, 0, 1, 3], [0, 2, 1, 3]]) expected = pd.Series([4, 9, 7, 5], index=index, dtype="Sparse[int]") > tm.assert_series_equal(result, expected) E AssertionError: Attributes of Series are different E E Attribute "dtype" are different E [left]: Sparse[float64, nan] E [right]: Sparse[int64, 0] /usr/lib/python3/dist-packages/pandas/tests/arrays/sparse/test_array.py:1196: AssertionError * qutip (tests.test_piqs.TestDicke.test_lindbladian): > self.data = np.array(obj, copy=copy, dtype=data_dtype) E TypeError: can't convert complex to float /usr/lib/python3/dist-packages/scipy/sparse/coo.py:161: TypeError
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--- Begin Message ---Source: scipy Source-Version: 1.6.2-1 Done: Drew Parsons <dpars...@debian.org> We believe that the bug you reported is fixed in the latest version of scipy, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 983...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Drew Parsons <dpars...@debian.org> (supplier of updated scipy package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 26 Mar 2021 19:21:49 +0100 Source: scipy Architecture: source Version: 1.6.2-1 Distribution: experimental Urgency: medium Maintainer: Debian Python Team <team+pyt...@tracker.debian.org> Changed-By: Drew Parsons <dpars...@debian.org> Closes: 967977 983404 Changes: scipy (1.6.2-1) experimental; urgency=medium . * Team upload. * New upstream release. - fixes matrix dtypes. Closes: #983404. - introduces upper-versioned Build-Depends: cython3 (<< 3.0), python3-pybind11 (<< 2.7), python3-wheel (<< 0.37.0) (leave python3-setuptools uncapped) - also Build-Depends: python3-all-dev (>= 3.7) * Stop ignoring build-time errors in debian/rules. Closes: #967977. Checksums-Sha1: 9c05d4ea9a5eb2c66329ca19ea4505558ab48dba 2828 scipy_1.6.2-1.dsc 7bd0bfab0797789d222dfecacaeb8761fd86c9bb 18731072 scipy_1.6.2.orig.tar.xz eccffdd647a5212ca7624b1f48692e78664a1ff1 21628 scipy_1.6.2-1.debian.tar.xz Checksums-Sha256: 025e55b5bfa633a13376f923af51826c6699241f9b52476d2eedf548cd9b4a8f 2828 scipy_1.6.2-1.dsc 8fadc443044396283c48191d48e4e07a3c3b6e2ae320b1a56e76bb42929e84d2 18731072 scipy_1.6.2.orig.tar.xz 76c785e7e3b4dff4255b42b44610a3aaa713035d9885a93c2c848ee5b56090f2 21628 scipy_1.6.2-1.debian.tar.xz Files: 99406610c4c30a32dfd42864e473ec9b 2828 python optional scipy_1.6.2-1.dsc b56e705c653ad808a9725dfe840d1258 18731072 python optional scipy_1.6.2.orig.tar.xz 6ea20b9bd3d4293981eda600e045dfd6 21628 python optional scipy_1.6.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEI8mpPlhYGekSbQo2Vz7x5L1aAfoFAmBebZwACgkQVz7x5L1a AfpUgQ//f3B0KPJa2dgMo87aqg6HJYqfs52/YNNYQW68KYm8TfY1EBjWAJegoGEN Y+GORwjEos7dfrd2IQjHfiK2gmi4A7RBSyOq3gNBH4o8uUCz3g6KQgqks60tkWin p0tYegYkmGXCTx7dPh4Auw5WMYJLntsnMUsghh5y+kBSwRSPi26y8OrvJ0dnKfNn Gvcork+r18Kf90eDkteLlHxIYA9FZlA2TCccd8F7b8u+jfzND7RcOozlll0OEq7a pUKvwz4cSzLVEtIgDxiV1j0rd5y7CeylwvaZHgf29ieMk8dvXwB755K5PXT29/kK hHqRELqoS1ub3P7m+eDnRE7g44+3O7Z52cVJqaEV2bbxp289TVWf80YPpFlIYVaS YukR5hxjKRIwA94qCzJvz9g8uMKPdaptVxFQy8fvzop0OG9Zs77tvW/IZOPd0Tps yHrMHSOiSnFVszmMk4fUDu4iGxjr7CGCwm6PGXYFFhvFe7lPFytwtD2LboEIrGKF Mdw8QX1uWsE4fVSPzDKMWjeMP6yXGk7qWeAsgtz5Mf33wPLxkAFlqYCuH00pJ2ek B5amWgiEEyyDOeRXEl66O/DkDZylJYDQ2sxZCR93TMIgbYr6/duPIYFw5WBR+r4Y KQZEnoTHiD0WsF2RnERU8UEPsWiTjFA3o0r6sEIBU8n5j0W8fo4= =6IBi -----END PGP SIGNATURE-----
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