Your message dated Thu, 04 Mar 2021 08:18:58 +0000 with message-id <e1lhjce-000f9l...@fasolo.debian.org> and subject line Bug#984475: fixed in libbio-db-ncbihelper-perl 1.7.6-4 has caused the Debian Bug report #984475, regarding libbio-db-ncbihelper-perl: missing Breaks+Replaces: bioperl (<< 1.7.3) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 984475: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=984475 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libbio-db-ncbihelper-perl Version: 1.7.6-2 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Control: affects -1 + bioperl-run Hi, during a test with piuparts I noticed your package fails to upgrade from 'buster'. It installed fine in 'buster', then the upgrade to 'bullseye' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package libbio-db-ncbihelper-perl. Preparing to unpack .../045-libbio-db-ncbihelper-perl_1.7.6-2_all.deb ... Unpacking libbio-db-ncbihelper-perl (1.7.6-2) ... dpkg: error processing archive /tmp/apt-dpkg-install-eyjeT8/045-libbio-db-ncbihelper-perl_1.7.6-2_all.deb (--unpack): trying to overwrite '/usr/bin/bp_biofetch_genbank_proxy', which is also in package bioperl 1.7.2-3 IIRC bioperl 1.7.3 is the version that got split up into several packages. cheers, Andreas
bioperl-run_1.7.3-6.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---Source: libbio-db-ncbihelper-perl Source-Version: 1.7.6-4 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of libbio-db-ncbihelper-perl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 984...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libbio-db-ncbihelper-perl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 04 Mar 2021 09:01:01 +0100 Source: libbio-db-ncbihelper-perl Architecture: source Version: 1.7.6-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 984475 Changes: libbio-db-ncbihelper-perl (1.7.6-4) unstable; urgency=medium . * Team upload. * Breaks+Replaces: bioperl (<< 1.7.3) Closes: #984475 Checksums-Sha1: 15e8de1c11d613253a9c5e821e3c95d828030cc3 2472 libbio-db-ncbihelper-perl_1.7.6-4.dsc 36aa5c428d0cc5e3f599a1da951e4e999643e25d 2964 libbio-db-ncbihelper-perl_1.7.6-4.debian.tar.xz 74de8914317b648c49eb63aded3cd6702c9f5867 7465 libbio-db-ncbihelper-perl_1.7.6-4_amd64.buildinfo Checksums-Sha256: 550b10a72d6d0f5adcabe657a6b4a85037ff0d64a6acaa8c852e9095c2ca3a70 2472 libbio-db-ncbihelper-perl_1.7.6-4.dsc efbe38cae1776a0dc295b256aab480d5a48dc118632184b52bf58aa4ee4f2a5d 2964 libbio-db-ncbihelper-perl_1.7.6-4.debian.tar.xz d26934b6b1108fae40c935d193e57e988f582d032a5ae9a74fd380f1ee927eda 7465 libbio-db-ncbihelper-perl_1.7.6-4_amd64.buildinfo Files: 07c155031541e14c97e48513afb5e559 2472 perl optional libbio-db-ncbihelper-perl_1.7.6-4.dsc 923684c5cf8af35e8e2004223fa62023 2964 perl optional libbio-db-ncbihelper-perl_1.7.6-4.debian.tar.xz cb23b39c5a037efbd8826bc160796cf4 7465 perl optional libbio-db-ncbihelper-perl_1.7.6-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmBAlW4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHumhAAmEnSoJ+yeK0mGXZOg41Eaj5x+02CFLx3 byPFkwnXxWuvZOcpFSsGHxGGevfV6BOo5FfYOO4BfZLZ4O2jUauPKws9rKeKAqBG kTo0m4xIGkFu9bNul8dC8WWjvCwOjw9kYdXSRMmwipxY4ESPJ+o/vfsyhPwzpm+Q Vx/aqGD/26R9nsS3r1PKcT+PICKA3o3ZvBhlcM+aR9StEd0ST2fv1UprqL6Y4+zQ kxw3+ScVDcOKiSDXzgnQJGNQ+h4bAbUcr9bm9Hg6cw/1jUOfPwG+MFxjiKt4n4V6 PTyzL3+bMM5faBdi5yVOsCIuCZdZuJTHyNU+ScYmaefxzli+plYvEaY2eRK+DiOp 1M9LZgwdGcbt9TDOQAMKq/oxwL530akJd1wOcKbk3RGi/bAjLUUrvPWHnnmJ/DwL Ikm/WMzc3aVbExab8UnY+KOAEa4PcVn+trlFKJPmXjRdArmukP7RgN59dUSJPSsO HtarGj1O01nm9Hwx0c1d/Qw60o7vRGJuhAPGuBiqwW4E13qjiHtqcZSMBG9iF1vR SR7d+Dw5W/8u5V2LEhEygYTKZ5pHv66FVNDHq7RakP3dbvmPKoUnX1oFE9CZ9Uja 8oyx+QBaVFZBIKKLefRglkj+Q2o9x/Ofqk2C6G4G0i1ihMgyWNwqar7DsNIMIyTH 6xLH5FzIrag= =W0An -----END PGP SIGNATURE-----
--- End Message ---
