Your message dated Tue, 02 Mar 2021 09:19:35 +0000 with message-id <e1lh1bn-0002zv...@fasolo.debian.org> and subject line Bug#982567: fixed in openms 2.6.0+cleaned1-3 has caused the Debian Bug report #982567, regarding openms build-depends on removed package. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 982567: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=982567 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: openms Version: 2.6.0+cleaned1-2 Severity: serious openms build-depends on seqan-dev which was built by the sequan source package, which was removed from unstable and testing recently. The person requesting the removal stated that "There are no other users of seqan 1.x in Debian." but it seems this was not correct. I tried removing the build-dependency as there did not appear to be a corresponding runtime depedency, but that made configure fail. I then tried with libseqan3-dev but that also made configure fail I then tried with libseqan2-dev, in that case configure succeeded but the build failed with/openms-2.6.0+cleaned1/src/openms/source/FORMAT/FASTAFile.cpp:44:10: fatal error: seqan/seq_io/guess_stream_format.h: No such file or directory 44 | #include <seqan/seq_io/guess_stream_format.h> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated.
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--- Begin Message ---Source: openms Source-Version: 2.6.0+cleaned1-3 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of openms, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 982...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated openms package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 02 Mar 2021 08:20:17 +0100 Source: openms Architecture: source Version: 2.6.0+cleaned1-3 Distribution: unstable Urgency: medium Maintainer: The Debichem Group <debichem-de...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 982567 Changes: openms (2.6.0+cleaned1-3) unstable; urgency=medium . * Team upload. * Include code copy of header files of seqan-dev (limited to those header files that are needed to build the package) Closes: #982567 * Document code copy of seqan in debian/README.source * Add debian/salsa-ci.yml Checksums-Sha1: a44b7953e00dbe8528c51d64dfb55b110e9e8906 2994 openms_2.6.0+cleaned1-3.dsc ad3523bc2462fa7154ea5a27992ab952386e9220 772160 openms_2.6.0+cleaned1-3.debian.tar.xz 99c25b49dde28f427e9e1df61d6e4b4c5b7309de 18263 openms_2.6.0+cleaned1-3_amd64.buildinfo Checksums-Sha256: 81e73989456a7c4b6cb513168a968b117aeceefbd8a4533240891fdf748ce238 2994 openms_2.6.0+cleaned1-3.dsc 08fd9c3e072a9d87f66a203d6fdfffeb8e67ad80ec6d572a8ca18a50ae64ddf6 772160 openms_2.6.0+cleaned1-3.debian.tar.xz 13f176dc84ccd53a9f849595ad87c5a7236a5e9b0f18cf64c57859953346cbea 18263 openms_2.6.0+cleaned1-3_amd64.buildinfo Files: 35471aa8c21210d9c7c5d15d2a7d786b 2994 science optional openms_2.6.0+cleaned1-3.dsc 7b8d7244737410f2618e6ae5c4b39c97 772160 science optional openms_2.6.0+cleaned1-3.debian.tar.xz 46979b126b63128b42a4b6f7a252c423 18263 science optional openms_2.6.0+cleaned1-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmA9/o0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHjCA//Q/vxlBYRS0o6Mh+OlHoVDi/uA3PBfwUq xBZB5+mNkjm6f7dkVS+9wA56H5ThaWZZX4tOm/g0P2Cs7JN0jjKlWTP94Dmv/kf6 Krf+lRYjqcgtkwn2ISqYvSk/H/pvBd0F0GOB3CQpydGQAXwqvNJz+i9ULlPDG7L4 ktx9ZTnmEs8SEFim1bWuklNU7w6H41Yx4dNAPVdjD0pdoXqfp9D0e6/vk72Gyt1r 1FAV7w1ju0DJMblX5p32+tEkXZU3k7BBSH4mJ7WjOKRoIA6d8K4gzrqIB/bhkqUQ yheb46NB6+GtiT7nUWVuf6+tYW+uoFiQ34sF+UW/i9nyMYB5qKR34suIiJthMj+R ndD0RH6jKxbrSzsNzXzbqV2dSALVAdIHZ08jNNmXyfAIf3JKOeES9sY3i3VkXmq8 dj9DKIsZyoUxkxjGDCdMwGz0sMPsYIrCvy0lAiPTJ0CTe9nnIShRdy6eX8Wg4rTN RY0Ba2AkaaA7u/75IgRrgfTWK6FCq+8T3lletlxxvRQwjSdGSaryRpUihlEXW2rr BvwR5NV6dlR/FXI+WAA9tkQjmLUoCNcEW1A1bcpEUyqd5lqzOy/vCjd7JPfwqQa1 45tN1ASj3cVjFH34jrzWwgBr4L7wRqs+0PmiRuft6Ua9fJlZBJKdij6Umpl1cdoA gOfWTDWqwpQ= =ykLg -----END PGP SIGNATURE-----
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