Your message dated Tue, 09 Feb 2021 07:49:08 +0000
with message-id <e1l9nlk-0007rc...@fasolo.debian.org>
and subject line Bug#978261: fixed in swiglpk 4.65.1-1
has caused the Debian Bug report #978261,
regarding swiglpk: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i
python{version} -p 3.9 returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
978261: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978261
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: swiglpk
Version: 4.65.0-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201226 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules build
> dh build --with python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:232: python3.9 setup.py config
> /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution
> option: 'test_suite'
> warnings.warn(msg)
> /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution
> option: 'include_package_data'
> warnings.warn(msg)
> Trying to determine glpk.h location
> glpk.h found at /usr/include/glpk.h
> running config
> dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:232: /usr/bin/python3 setup.py build
> /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution
> option: 'test_suite'
> warnings.warn(msg)
> /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution
> option: 'include_package_data'
> warnings.warn(msg)
> Trying to determine glpk.h location
> glpk.h found at /usr/include/glpk.h
> running build
> running build_ext
> building 'swiglpk._swiglpk' extension
> swigging swiglpk/glpk.i to swiglpk/glpk_wrap.c
> swig -python -o swiglpk/glpk_wrap.c swiglpk/glpk.i
> swiglpk/glpk_clean.h:1000: Warning 314: 'in' is a python keyword, renaming to
> '_in'
> swiglpk/glpk_clean.h:201: Warning 451: Setting a const char * variable may
> leak memory.
> creating build
> creating build/temp.linux-x86_64-3.9
> creating build/temp.linux-x86_64-3.9/swiglpk
> x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g
> -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat
> -Werror=format-security -g -fwrapv -O2 -g -O2
> -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
> -I/usr/include/python3.9 -c swiglpk/glpk_wrap.c -o
> build/temp.linux-x86_64-3.9/swiglpk/glpk_wrap.o
> In file included from /usr/include/python3.9/pytime.h:6,
> from /usr/include/python3.9/Python.h:85,
> from swiglpk/glpk_wrap.c:154:
> swiglpk/glpk_wrap.c: In function ‘wrap_glp_term_hook_cb’:
> /usr/include/python3.9/object.h:422:13: warning: ‘r’ may be used
> uninitialized in this function [-Wmaybe-uninitialized]
> 422 | if (--op->ob_refcnt != 0) {
> | ~~^~~~~~~~~~~
> swiglpk/glpk_wrap.c:2732:31: note: ‘r’ was declared here
> 2732 | PyObject *callback, *args, *r;
> | ^
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions
> -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2
> -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2
> build/temp.linux-x86_64-3.9/swiglpk/glpk_wrap.o -lglpk -o
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk/_swiglpk.cpython-39-x86_64-linux-gnu.so
> running build_py
> copying swiglpk/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk
> copying swiglpk/swiglpk.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk
> dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build;
> python3.9 -m nose -v
> Failure: ImportError
> (/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk/_swiglpk.cpython-39-x86_64-linux-gnu.so:
> undefined symbol: glp_netgen_prob) ... ERROR
>
> ======================================================================
> ERROR: Failure: ImportError
> (/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk/_swiglpk.cpython-39-x86_64-linux-gnu.so:
> undefined symbol: glp_netgen_prob)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest
> raise self.exc_val.with_traceback(self.tb)
> File "/usr/lib/python3/dist-packages/nose/loader.py", line 416, in
> loadTestsFromName
> module = self.importer.importFromPath(
> File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in
> importFromPath
> return self.importFromDir(dir_path, fqname)
> File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in
> importFromDir
> mod = load_module(part_fqname, fh, filename, desc)
> File "/usr/lib/python3.9/imp.py", line 244, in load_module
> return load_package(name, filename)
> File "/usr/lib/python3.9/imp.py", line 216, in load_package
> return _load(spec)
> File "<frozen importlib._bootstrap>", line 711, in _load
> File "<frozen importlib._bootstrap>", line 680, in _load_unlocked
> File "<frozen importlib._bootstrap_external>", line 790, in exec_module
> File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk/__init__.py",
> line 1, in <module>
> from .swiglpk import *
> File
> "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk/swiglpk.py",
> line 13, in <module>
> from . import _swiglpk
> ImportError:
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build/swiglpk/_swiglpk.cpython-39-x86_64-linux-gnu.so:
> undefined symbol: glp_netgen_prob
>
> ----------------------------------------------------------------------
> Ran 1 test in 0.010s
>
> FAILED (errors=1)
> E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_swiglpk/build; python3.9 -m nose -v
> dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.9
> returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2020/12/26/swiglpk_4.65.0-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: swiglpk
Source-Version: 4.65.1-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
swiglpk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 978...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated swiglpk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 09 Feb 2021 08:28:08 +0100
Source: swiglpk
Architecture: source
Version: 4.65.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 978261
Changes:
swiglpk (4.65.1-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Testsuite: autopkgtest-pkg-python (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* ignore problematic functions via swig directives in glpk.i
Closes: #978261
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Checksums-Sha256:
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Files:
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1870f23fb67b60263ef1f7b343ab657b 9856540 python optional
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swiglpk_4.65.1-1.debian.tar.xz
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swiglpk_4.65.1-1_amd64.buildinfo
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