Source: r-bioc-purecn Version: 1.20.0+dfsg-2 Severity: serious Control: affects -1 src:bcbio
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-purecn/10259298/log.gz ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error (test_annotateTargets.R:2:1): (code run outside of `test_that()`) ───── Error: there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ Backtrace: █ 1. └─base::library(TxDb.Hsapiens.UCSC.hg19.knownGene) test_annotateTargets.R:2:0 ── Error (test_processMultipleSamples.R:18:2): example output correct ────────── Error: processMultipleSamples requires the copynumber package. This is most likely a user error due to invalid input data or parameters (PureCN 1.20.0). Backtrace: █ 1. └─PureCN::processMultipleSamples(...) test_processMultipleSamples.R:18:8 2. └─PureCN:::.stopUserError("processMultipleSamples requires the copynumber package.") [ FAIL 2 | WARN 13 | SKIP 1 | PASS 336 ] Error: Test failures Execution halted autopkgtest [08:02:24]: test pkg-r-autopkgtest: -----------------------] autopkgtest [08:02:24]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - pkg-r-autopkgtest FAIL non-zero exit status 1 autopkgtest [08:02:24]: @@@@@@@@@@@@@@@@@@@@ summary run-unit-test PASS pkg-r-autopkgtest FAIL non-zero exit status 1
