Your message dated Fri, 29 Jan 2021 15:19:20 +0000
with message-id <e1l5vyo-0001j8...@fasolo.debian.org>
and subject line Bug#972914: fixed in pyhst2 2020c-1
has caused the Debian Bug report #972914,
regarding pyhst2 ftbfs with python3.9
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
972914: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972914
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:pyhst2
Version: 2020a-3
Severity: serious
Tags: sid bullseye ftbfs
User: debian-pyt...@lists.debian.org
Usertags: python3.9
pyhst2 ftbfs with python3.9; to reproduce, you can use the repositories found
at:
deb [trusted=yes] http://people.debian.org/~doko/tmp/python3.9 ./
deb [trusted=yes] http://people.debian.org/~ginggs/python3.9-repo ./
see
https://people.debian.org/~ginggs/python3.9-default/pyhst2_2020a-3build1_amd64-2020-10-25T06:41:37Z.build
[...]
dh build --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:217: python3.8 setup.py config
running config
I: pybuild base:217: python3.9 setup.py config
running config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3.8 setup.py build
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/congrid.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/combina.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/phasesimple.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/phase.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/Control.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/pyhst_segment.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/getSysOutput.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/string_six.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/PyHST.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/NNFBPTrain.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/pyhst_jp2edf.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/setCpuSet.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/tomography.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/getCpuSetRange.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/pyhst_unsharp3D_.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/pyhst_.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/EdfFile.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/LTSparsePrep.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/sirtfilter.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
copying PyHST/Parameters_module.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/test
copying PyHST/test/test_all.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/test
copying PyHST/test/stop_test_integrate.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/test
copying PyHST/test/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/test
copying PyHST/test/test_dummy.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/test
copying PyHST/test/utilstest.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/test
copying PyHST/test/test_crayon.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/test
creating
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/third_party
copying PyHST/third_party/setup.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/third_party
copying PyHST/third_party/enum.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/third_party
copying PyHST/third_party/transformations.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/third_party
copying PyHST/third_party/__init__.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/third_party
copying PyHST/third_party/six.py ->
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_pyhst2/build/PyHST2_2019b/third_party
running build_ext
cythoning PyHST/segment/segment_cy.pyx to PyHST/segment/segment_cy.cpp
building 'PyHST2_2019b.Cspace' extension
Warning: Can't read registry to find the necessary compiler setting
Make sure that Python modules winreg, win32api or win32con are installed.
C compiler: x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare
-DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat
-Werror=format-security -g -fwrapv -O2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build
creating build/temp.linux-x86_64-3.8
creating build/temp.linux-x86_64-3.8/PyHST
creating build/temp.linux-x86_64-3.8/PyHST/Cspace
compile options: '-I/usr/include
-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/openmpi/
-I/usr/include/hdf5/serial/ -I/usr/include/python3.8 -c'
extra options: 'gcc'
mpicc: PyHST/Cspace/CCspace.c
mpicc: PyHST/Cspace/cpyutils.c
mpicc: PyHST/Cspace/Cspace.c
mpicc: PyHST/Cspace/edftools.c
mpicc: PyHST/Cspace/pyhst_nnfbp.c
mpicc: PyHST/Cspace/cpu_main.c
PyHST/Cspace/Cspace.c:33:9: fatal error: Python.h: No such file or directory
33 | #include"Python.h"
| ^~~~~~~~~~
compilation terminated.
PyHST/Cspace/cpyutils.c:33:9: fatal error: Python.h: No such file or directory
33 | #include"Python.h"
| ^~~~~~~~~~
compilation terminated.
error: Command "mpicc -I/usr/include
-I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/openmpi/
-I/usr/include/hdf5/serial/ -I/usr/include/python3.8 -c PyHST/Cspace/cpyutils.c
-o build/temp.linux-x86_64-3.8/PyHST/Cspace/cpyutils.o -fPIC -fopenmp" failed
with exit status 1
E: pybuild pybuild:352: build: plugin distutils failed with: exit code=1:
/usr/bin/python3.8 setup.py build
dh_auto_build: error: pybuild --build -i python{version} -p "3.8 3.9" returned
exit code 13
--- End Message ---
--- Begin Message ---
Source: pyhst2
Source-Version: 2020c-1
Done: Picca Frédéric-Emmanuel <pi...@debian.org>
We believe that the bug you reported is fixed in the latest version of
pyhst2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 972...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Picca Frédéric-Emmanuel <pi...@debian.org> (supplier of updated pyhst2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 29 Jan 2021 15:14:00 +0100
Binary: python3-pyhst2-cuda python3-pyhst2-cuda-dbgsym
Source: pyhst2
Architecture: amd64 source
Version: 2020c-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Picca Frédéric-Emmanuel <pi...@debian.org>
Closes: 968318 972914
Description:
python3-pyhst2-cuda - Python High Speed Tomographic reconstruction
Changes:
pyhst2 (2020c-1) unstable; urgency=medium
.
* new Upstream 2020c (Closes: #972914)
* pathes/0001-support-cuda-11.patch (Closes: #968318)
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