Your message dated Thu, 14 Jan 2021 14:22:59 +0000
with message-id <e1l03wd-000exw...@fasolo.debian.org>
and subject line Bug#978311: fixed in glpk-java 1.12.0-2
has caused the Debian Bug report #978311,
regarding glpk-java: FTBFS: dh_auto_test: error: make -j4 check VERBOSE=1
returned exit code 2
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
978311: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978311
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: glpk-java
Version: 1.12.0-1
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201226 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[2]: Entering directory '/<<PKGBUILDDIR>>/swig'
> cd ../examples/java;/usr/bin/javac -source 1.8 -target 1.8 \
> -classpath ../../swig/glpk-java.jar Gmpl.java
> warning: [options] bootstrap class path not set in conjunction with -source 8
> 1 warning
> cd ../examples/java;java -Djava.library.path=../../swig/.libs \
> -classpath ../../swig/glpk-java.jar:. Gmpl marbles.mod
> Reading model section from marbles.mod...
> 51 lines were read
> The smallest bag contains 3 marbles
> The largest bag contains 42 marbles
> 857 colors are used
> Generating obj...
> Generating nBags...
> Generating fCol...
> Model has been successfully generated
> GLPK Integer Optimizer 5.0
> 1002 rows, 1100 columns, 4140 non-zeros
> 100 integer variables, all of which are binary
> Preprocessing...
> 858 rows, 957 columns, 2997 non-zeros
> 100 integer variables, all of which are binary
> Scaling...
> A: min|aij| = 1.000e+00 max|aij| = 1.000e+00 ratio = 1.000e+00
> Problem data seem to be well scaled
> Constructing initial basis...
> Size of triangular part is 858
> Solving LP relaxation...
> GLPK Simplex Optimizer 5.0
> 858 rows, 957 columns, 2997 non-zeros
> * 0: obj = -0.000000000e+00 inf = 0.000e+00 (857)
> Perturbing LP to avoid stalling [472]...
> Removing LP perturbation [1157]...
> * 1157: obj = 3.275000000e+02 inf = 7.824e-13 (0) 2
> OPTIMAL LP SOLUTION FOUND
> Integer optimization begins...
> Long-step dual simplex will be used
> + 1157: mip = not found yet <= +inf (1; 0)
> + 1303: >>>>> 3.170000000e+02 <= 3.265000000e+02 3.0% (9; 0)
> Better solution found
> + 1713: >>>>> 3.180000000e+02 <= 3.210000000e+02 0.9% (9; 8)
> Better solution found
> + 1784: >>>>> 3.190000000e+02 <= 3.195000000e+02 0.2% (5; 20)
> Better solution found
> + 1793: mip = 3.190000000e+02 <= tree is empty 0.0% (0; 37)
> INTEGER OPTIMAL SOLUTION FOUND
> Bags chosen:
> bag 7, bag 12, bag 23, bag 28, bag 36, bag 45, bag 75, bag 82, bag 83, bag 99.
> Colors retrieved: 319
> Model has been successfully processed
> cd ../examples/java;/usr/bin/javac -source 1.8 -target 1.8 -classpath \
> ../../swig/glpk-java.jar Lp.java
> warning: [options] bootstrap class path not set in conjunction with -source 8
> 1 warning
> cd ../examples/java;java -Djava.library.path=../../swig/.libs \
> -classpath ../../swig/glpk-java.jar:. Lp
> Problem created
> GLPK Simplex Optimizer 5.0
> 2 rows, 3 columns, 4 non-zeros
> * 0: obj = 1.000000000e+00 inf = 0.000e+00 (2)
> * 3: obj = 4.250000000e-01 inf = 0.000e+00 (0)
> OPTIMAL LP SOLUTION FOUND
> z = 0.42500000000000004
> x1 = 0.25
> x2 = 0.09999999999999998
> x3 = 0.5
> cd ../examples/java;/usr/bin/javac -source 1.8 -target 1.8 -classpath \
> ../../swig/glpk-java.jar Mip.java
> warning: [options] bootstrap class path not set in conjunction with -source 8
> 1 warning
> cd ../examples/java;java -Djava.library.path=../../swig/.libs \
> -classpath ../../swig/glpk-java.jar:. Mip
> Problem created
> GLPK Integer Optimizer 5.0
> 2 rows, 2 columns, 4 non-zeros
> 2 integer variables, none of which are binary
> Preprocessing...
> 2 rows, 2 columns, 4 non-zeros
> 2 integer variables, none of which are binary
> Scaling...
> A: min|aij| = 1.000e+00 max|aij| = 1.000e+01 ratio = 1.000e+01
> Problem data seem to be well scaled
> Constructing initial basis...
> Size of triangular part is 2
> Solving LP relaxation...
> GLPK Simplex Optimizer 5.0
> 2 rows, 2 columns, 4 non-zeros
> * 0: obj = -0.000000000e+00 inf = 0.000e+00 (2)
> * 3: obj = 6.833333333e+01 inf = 0.000e+00 (0)
> OPTIMAL LP SOLUTION FOUND
> Integer optimization begins...
> Long-step dual simplex will be used
> + 3: mip = not found yet <= +inf (1; 0)
> Solution found by heuristic: 63
> + 4: >>>>> 6.800000000e+01 <= 6.800000000e+01 0.0% (3; 0)
> + 4: mip = 6.800000000e+01 <= tree is empty 0.0% (0; 5)
> INTEGER OPTIMAL SOLUTION FOUND
> obj = 68.0
> x1 = 4.0
> x2 = 0.0
> cd ../examples/java;/usr/bin/javac -source 1.8 -target 1.8 \
> -classpath ../../swig/glpk-java.jar OutOfMemory.java
> warning: [options] bootstrap class path not set in conjunction with -source 8
> 1 warning
> cd ../examples/java;java -Djava.library.path=../../swig/.libs \
> -classpath ../../swig/glpk-java.jar:. OutOfMemory
> Testing allocation of integer array.
> 1: No error should occur
> 1: Success
> 2: Error should occur
> java.lang.OutOfMemoryError: new_intArray: calloc failed, C-runtime heap is
> full.
> at org.gnu.glpk.GLPKJNI.new_intArray(Native Method)
> at org.gnu.glpk.GLPK.new_intArray(GLPK.java:44)
> at OutOfMemory.main(OutOfMemory.java:25)
> 2: Success
> cd ../examples/java;/usr/bin/javac -source 1.8 -target 1.8 \
> -classpath ../../swig/glpk-java.jar ErrorDemo.java
> warning: [options] bootstrap class path not set in conjunction with -source 8
> 1 warning
> cd ../examples/java;java -Djava.library.path=../../swig/.libs \
> -classpath ../../swig/glpk-java.jar:. ErrorDemo
> GLPK version: 5.0
>
> Iteration 1, success expected.
> Problem created
> Successful execution.
>
> Iteration 2, error expected to occur.
> Problem created
> leaving function glp_java_set_msg_lvl.
> entering function glp_add_rows.
> glp_add_rows: nrs = -1; invalid number of rows
> Error detected in file api/prob1.c at line 254
> leaving function glp_add_rows.
> Error in callback: function glp_add_rows failed
> entering function glp_java_set_msg_lvl.
> function glp_intopt failed
> An error has occured.
>
> Iteration 3, success expected.
> Problem created
> Successful execution.
>
> Iteration 4, error expected to occur.
> Problem created
> leaving function glp_java_set_msg_lvl.
> entering function glp_add_rows.
> glp_add_rows: nrs = -1; invalid number of rows
> Error detected in file api/prob1.c at line 254
> leaving function glp_add_rows.
> Error in callback: function glp_add_rows failed
> entering function glp_java_set_msg_lvl.
> function glp_intopt failed
> An error has occured.
> cd ../examples/java;/usr/bin/javac -source 1.8 -target 1.8 \
> -classpath ../../swig/glpk-java.jar LinOrd.java
> warning: [options] bootstrap class path not set in conjunction with -source 8
> 1 warning
> cd ../examples/java && rm -f tiw56r72.sol && \
> java -Djava.library.path=../../swig/.libs \
> -classpath ../../swig/glpk-java.jar:. LinOrd tiw56r72.mat \
> tiw56r72.sol && rm tiw56r72.sol
> Reading LOP instance data from 'tiw56r72.mat'...
> INPUT-OUTPUT-TABELLE BRD 1 9 7 2 (REAL)
> Digraph has 56 nodes
> Constructing initial basis...
> Size of triangular part is 1540
> GLPK Simplex Optimizer 5.0
> 1540 rows, 3080 columns, 3080 non-zeros
> * 0: obj = 2.691170000e+05 inf = 0.000e+00 (680)
> * 680: obj = 3.562500000e+05 inf = 0.000e+00 (0)
> OPTIMAL LP SOLUTION FOUND
> GLPK Integer Optimizer 5.0
> 1540 rows, 3080 columns, 3080 non-zeros
> 3080 integer variables, all of which are binary
> Integer optimization begins...
> Long-step dual simplex will be used
> + 680: mip = not found yet <= +inf (1; 0)
> 0 inactive constraints removed
> 228 violated constraints were generated
> 0 inactive constraints removed
> 187 violated constraints were generated
> 38 inactive constraints removed
> 38 inactive constraints removed
> 198 violated constraints were generated
> 107 inactive constraints removed
> 107 inactive constraints removed
> 188 violated constraints were generated
> 124 inactive constraints removed
> 124 inactive constraints removed
> 158 violated constraints were generated
> 120 inactive constraints removed
> 120 inactive constraints removed
> 171 violated constraints were generated
> 154 inactive constraints removed
> 154 inactive constraints removed
> 140 violated constraints were generated
> 123 inactive constraints removed
> 123 inactive constraints removed
> 149 violated constraints were generated
> 134 inactive constraints removed
> 134 inactive constraints removed
> 109 violated constraints were generated
> 101 inactive constraints removed
> 101 inactive constraints removed
> 132 violated constraints were generated
> 131 inactive constraints removed
> 131 inactive constraints removed
> 113 violated constraints were generated
> 110 inactive constraints removed
> 110 inactive constraints removed
> 129 violated constraints were generated
> 132 inactive constraints removed
> 132 inactive constraints removed
> 94 violated constraints were generated
> 101 inactive constraints removed
> 101 inactive constraints removed
> 86 violated constraints were generated
> 84 inactive constraints removed
> 84 inactive constraints removed
> 102 violated constraints were generated
> 97 inactive constraints removed
> 97 inactive constraints removed
> 101 violated constraints were generated
> 94 inactive constraints removed
> 94 inactive constraints removed
> 129 violated constraints were generated
> 114 inactive constraints removed
> 114 inactive constraints removed
> 61 violated constraints were generated
> 60 inactive constraints removed
> 60 inactive constraints removed
> 96 violated constraints were generated
> 90 inactive constraints removed
> 90 inactive constraints removed
> 56 violated constraints were generated
> 57 inactive constraints removed
> 57 inactive constraints removed
> 47 violated constraints were generated
> 47 inactive constraints removed
> 47 inactive constraints removed
> 34 violated constraints were generated
> 38 inactive constraints removed
> 38 inactive constraints removed
> 25 violated constraints were generated
> 29 inactive constraints removed
> 29 inactive constraints removed
> 43 violated constraints were generated
> 41 inactive constraints removed
> 41 inactive constraints removed
> 20 violated constraints were generated
> 18 inactive constraints removed
> 18 inactive constraints removed
> 31 violated constraints were generated
> 32 inactive constraints removed
> 32 inactive constraints removed
> 18 violated constraints were generated
> 16 inactive constraints removed
> 16 inactive constraints removed
> 22 violated constraints were generated
> 21 inactive constraints removed
> 21 inactive constraints removed
> 11 violated constraints were generated
> 11 inactive constraints removed
> 11 inactive constraints removed
> 11 violated constraints were generated
> 14 inactive constraints removed
> 14 inactive constraints removed
> 18 violated constraints were generated
> 18 inactive constraints removed
> 18 inactive constraints removed
> 1 violated constraints were generated
> 1 inactive constraints removed
> 1 inactive constraints removed
> 5 violated constraints were generated
> 4 inactive constraints removed
> 4 inactive constraints removed
> 0 violated constraints were generated
> + 2795: >>>>> 3.416230000e+05 <= 3.416230000e+05 0.0% (1; 0)
> + 2795: mip = 3.416230000e+05 <= tree is empty 0.0% (0; 1)
> INTEGER OPTIMAL SOLUTION FOUND
> Writing MIP solution to 'tiw56r72.sol'...
> cd ../examples/java; /usr/bin/javac -source 1.8 -target 1.8 \
> -classpath ../../swig/glpk-java.jar MinimumCostFlow.java
> warning: [options] bootstrap class path not set in conjunction with -source 8
> 1 warning
> cd ../examples/java; rm -f mincost.dimacs mincost.lp && \
> java -Djava.library.path=../../swig/.libs \
> -classpath ../../swig/glpk-java.jar:. MinimumCostFlow && \
> rm mincost.dimacs mincost.lp
> Writing min-cost flow problem data to 'mincost.dimacs'...
> 19 lines were written
> Writing problem data to 'mincost.lp'...
> 34 lines were written
> cd ../examples/java;/usr/bin/javac -source 1.8 -target 1.8 \
> -classpath ../../swig/glpk-java.jar Relax4.java
> warning: [options] bootstrap class path not set in conjunction with -source 8
> 1 warning
> cd ../examples/java;java -Djava.library.path=../../swig/.libs \
> -classpath ../../swig/glpk-java.jar:. Relax4 sample.min
> Reading min-cost flow problem data from 'sample.min'...
> Flow network has 9 nodes and 14 arcs
> 26 lines were read
> relax4_inidat: sorry, this routine is temporarily disabled due to licensing
> problems
> Error detected in file misc/relax4.c at line 18
> function glp_mincost_relax4 failed
> make[2]: *** [Makefile:521: check] Error 1
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/swig'
> make[1]: *** [Makefile:405: check-recursive] Error 1
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_test: error: make -j4 check VERBOSE=1 returned exit code 2
The full build log is available from:
http://qa-logs.debian.net/2020/12/26/glpk-java_1.12.0-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: glpk-java
Source-Version: 1.12.0-2
Done: Sébastien Villemot <sebast...@debian.org>
We believe that the bug you reported is fixed in the latest version of
glpk-java, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 978...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sébastien Villemot <sebast...@debian.org> (supplier of updated glpk-java
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 14 Jan 2021 15:06:27 +0100
Source: glpk-java
Architecture: source
Version: 1.12.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Sébastien Villemot <sebast...@debian.org>
Closes: 978311
Changes:
glpk-java (1.12.0-2) unstable; urgency=medium
.
* Bump to debhelper 13
* debian/rules: simplify using debhelper 12.8’s execute_after_* rules
* disable-relax4.patch: new patch, fixes FTBFS (Closes: #978311)
* debian/watch: bump to format v4
* debian/control: add Rules-Requires-Root: no
* Bump to S-V 4.5.1
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5b1751376a757116a6aa780b4e76fc4dfe2ea46c 4164 glpk-java_1.12.0-2.debian.tar.xz
14bff02680eee6fc58304c1c22c724a840f9fe6a 9321
glpk-java_1.12.0-2_amd64.buildinfo
Checksums-Sha256:
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Files:
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001d65b15a3a79cad652b12ddc3ca134 4164 java optional
glpk-java_1.12.0-2.debian.tar.xz
181537f2ba02c99554cc7aef3e8a0127 9321 java optional
glpk-java_1.12.0-2_amd64.buildinfo
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--- End Message ---
