Your message dated Thu, 07 Jan 2021 21:20:28 +0000
with message-id <e1kxcho-0003hf...@fasolo.debian.org>
and subject line Bug#968573: fixed in wham-align 0.1.5-6
has caused the Debian Bug report #968573,
regarding wham-align: autopkgtest arm64 failure: times out after
./sequences:,chr1_100k.fa,[93m[1mTest 1[0m
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
968573: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=968573
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: wham-align
Version: 0.1.5-3.1
X-Debbugs-CC: debian...@lists.debian.org
Severity: serious
User: debian...@lists.debian.org
Usertags: fails-always timesout
Dear maintainer(s),
Your package wham-align has an autopkgtest, great. However, it fails on
arm64 because it times out. I copied some of the output at the bottom of
this report.
Paul
https://ci.debian.net/data/autopkgtest/testing/arm64/w/wham-align/6682709/log.gz
autopkgtest [11:12:08]: test run-unit-test: [-----------------------
.:
reads
ref
sequences
./reads:
sample.fq
sample_pair_1.fq
sample_pair_2.fq
./ref:
README.test_data
output1
output2
output3
output4
output5
output6
output7
./sequences:
chr1_100k.fa
[93m[1mTest 1[0m
autopkgtest [13:58:48]: ERROR: timed out on command "su -s /bin/bash
debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 ||
true; . ~/.profile >/dev/null 2>&1 || true;
buildtree="/tmp/autopkgtest-lxc.n87033z5/downtmp/build.wq5/src"; mkdir
-p -m 1777 --
"/tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-artifacts"; export
AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-artifacts";
export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755
"/tmp/autopkgtest-lxc.n87033z5/downtmp/autopkgtest_tmp"; export
AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.n87033z5/downtmp/autopkgtest_tmp";
export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive;
export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=4; unset LANGUAGE
LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE LC_MONETARY LC_MESSAGES
LC_PAPER LC_NAME LC_ADDRESS LC_TELEPHONE LC_MEASUREMENT
LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo
$$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f
/tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod
+x
/tmp/autopkgtest-lxc.n87033z5/downtmp/build.wq5/src/debian/tests/run-unit-test;
touch /tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-stdout
/tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-stderr;
/tmp/autopkgtest-lxc.n87033z5/downtmp/build.wq5/src/debian/tests/run-unit-test
2> >(tee -a /tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-stderr
>&2) > >(tee -a
/tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-stdout);" (kind: test)
autopkgtest [13:58:48]: test run-unit-test: -----------------------]
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: wham-align
Source-Version: 0.1.5-6
Done: Étienne Mollier <etienne.moll...@mailoo.org>
We believe that the bug you reported is fixed in the latest version of
wham-align, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 968...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <etienne.moll...@mailoo.org> (supplier of updated wham-align
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 07 Jan 2021 21:14:49 +0100
Source: wham-align
Architecture: source
Version: 0.1.5-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Étienne Mollier <etienne.moll...@mailoo.org>
Closes: 968573
Changes:
wham-align (0.1.5-6) unstable; urgency=medium
.
* Team upload.
* Build with -fsigned-char. (Closes: #968573)
* Add spelling.patch.
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--- End Message ---
