Your message dated Thu, 03 Dec 2020 15:25:01 +0000 with message-id <e1kkqtd-000cs2...@fasolo.debian.org> and subject line Bug#971829: fixed in pyopencl 2020.2.2-1 has caused the Debian Bug report #971829, regarding python3-pyopencl: Random runtime error in the C++ layer (crash the program) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 971829: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=971829 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: python3-pyopencl Version: 2019.1.1-1 Severity: critical Tags: upstream Justification: causes serious data loss Dear Maintainer, We are using pyopencl to perform GPU computing in Python workflows. Since we deployed Ubuntu 20.04 (which is using the same version as Debian 10 (and newer), we encounter various crashes of the server with the following error message: ``` terminate called after throwing an instance of 'std::runtime_error' what(): pybind11_object_dealloc(): Tried to deallocate unregistered instance! ``` As thoses server are managing HDF5, this causes (lots of) data corruption. The good piece of news is that the bug is known and has been fixed by this patch: https://github.com/inducer/pyopencl/commit/1dd0183dba05c17d0c21e3f9b3d73d0fee257a2d Moreover there has been a 5 releases since then which include the fix. The easiest would probably be to upgrade the package in debian. Conda based system with recent version of pyopencl are not subject to this kind of crashes. Thanks for your help, Jerome Kieffer -- System Information: Debian Release: 10.6 APT prefers stable APT policy: (800, 'stable'), (500, 'stable-updates') Architecture: amd64 (x86_64) Foreign Architectures: i386, armhf Kernel: Linux 4.19.0-11-amd64 (SMP w/4 CPU cores) Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_WARN, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=fr_FR.UTF8, LC_CTYPE=fr_FR.UTF8 (charmap=UTF-8), LANGUAGE=fr_FR.UTF8:fr:en_GB.UTF8:en (charmap=UTF-8) Shell: /bin/sh linked to /bin/bash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages python3-pyopencl depends on: ii amd-opencl-icd [opencl-icd] 1:15.9-4~deb8u2 ii libc6 2.28-10 ii libgcc1 1:8.3.0-6 ii libstdc++6 8.3.0-6 ii nvidia-opencl-icd [opencl-icd] 450.66-1~bpo10+1 ii ocl-icd-libopencl1 [libopencl1] 2.2.12-2 ii pocl-opencl-icd [opencl-icd] 1.2-5 ii python3 3.7.3-1 ii python3-appdirs 1.4.3-1 ii python3-decorator 4.3.0-1.1 ii python3-numpy [python3-numpy-abi9] 1:1.16.2-1 ii python3-pkg-resources 40.8.0-1 ii python3-pytools 2019.1-1 ii python3-six 1.12.0-1 Versions of packages python3-pyopencl recommends: ii python-pyopencl-doc 2019.1.1-1 ii python3-mako 1.0.7+ds1-1 Versions of packages python3-pyopencl suggests: pn python3-imaging-tk <none> ii python3-matplotlib 3.0.2-2 ii python3-opengl 3.1.0+dfsg-2 ii python3-pyopencl-dbg 2019.1.1-1 ii python3-pytest 3.10.1-2 -- no debconf information
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--- Begin Message ---Source: pyopencl Source-Version: 2020.2.2-1 Done: Andreas Beckmann <a...@debian.org> We believe that the bug you reported is fixed in the latest version of pyopencl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 971...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Beckmann <a...@debian.org> (supplier of updated pyopencl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 03 Dec 2020 15:44:37 +0100 Source: pyopencl Architecture: source Version: 2020.2.2-1 Distribution: experimental Urgency: medium Maintainer: Debian OpenCL Maintainers <pkg-opencl-de...@lists.alioth.debian.org> Changed-By: Andreas Beckmann <a...@debian.org> Closes: 947864 971829 Changes: pyopencl (2020.2.2-1) experimental; urgency=medium . [ Andreas Beckmann ] * New upstream release. (Closes: #971829) * Refresh patches. * Bump Build-Depends: python3-pybind11 (>= 2.5.0). * The bullseye toolchain defaults to linking with --as-needed. * Build for all architectures where pocl-opencl-icd is available. (Closes: #947864) (LP: #1264844) * Import upstream tarballs into the packaging repository. * Use github repository as upstream. * Let the get-orig-source target create a reproducible tarball. * Switch to debhelper-compat (= 13) * Update Standards-Version to 4.5.1; no changes necessary. * Fix building twice in a row. * Rewrite shebang in python examples to python3. * Add myself to Uploaders. * Upload to experimental. . [ Tomasz Rybak ] * Add options to get verbose log from pybuild. Checksums-Sha1: bacb578d4e0a91f6c00c94c3666d799267fd285e 2564 pyopencl_2020.2.2-1.dsc 5988941ab1727151410d61f872c4102d2718d816 283636 pyopencl_2020.2.2.orig.tar.xz 3471568b0460603ffc1902d69263ff868877eb7a 25476 pyopencl_2020.2.2-1.debian.tar.xz f1975bfcc0a14eb2323ecc054a4c0e281b89da38 10363 pyopencl_2020.2.2-1_source.buildinfo Checksums-Sha256: 3bf00d186ca517d454ec6c195e2ef99f03ad0725491c18bffdff0e0ca9ab3ab4 2564 pyopencl_2020.2.2-1.dsc 9b8a0322a98030a1c21f4907cddb5fd5e9e7c6524b4712c11012adbb6853ccad 283636 pyopencl_2020.2.2.orig.tar.xz 110f00a8a4a4d91a3aec5ab4727dae477bb370ad70ce56a8e1da9979558ce200 25476 pyopencl_2020.2.2-1.debian.tar.xz bf34a22c38997798572e68a684bcb0db98cf86fbe413744de7c9b56d9029849f 10363 pyopencl_2020.2.2-1_source.buildinfo Files: 83e4b77321021c923947c9c375af21c2 2564 python optional pyopencl_2020.2.2-1.dsc ba9cddfb7903bc2cccc9bf7c6387a137 283636 python optional pyopencl_2020.2.2.orig.tar.xz 93395ef929fb10a663d82820d79e8cb1 25476 python optional pyopencl_2020.2.2-1.debian.tar.xz b73b1225c46022ddbc19507c0224b4dd 10363 python optional pyopencl_2020.2.2-1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEE6/MKMKjZxjvaRMaUX7M/k1np7QgFAl/I/g0QHGFuYmVAZGVi aWFuLm9yZwAKCRBfsz+TWentCOKkD/97noaCFjwf9IHeCrZp7xfxY6r2AaWOJjCM x/+Jo8C++lLHbCO2CJyaJ/9vWBj/4LDyAAxWLZPRBYEC8TdgDGZQ3nzt9B7aycOU I62hXTiyq0uFEvB3EiYbyt/2iJRAn0GX9khqkNxqtTrfMSRvYvTATVHQlbL+vAed lY8uS4Mnp1B8FwZZE6xgczBfOqLoCS9xlsVeg0zTZJzM1sgqP8xvRmTZdVcxxzg4 eb32iQh9sKEN4na4MddM5SVX9omq7g5eE9LDCUeDcO4/gxWTddjxkwsFTFQtM01s OFxZ1bPx2dNvW/KhcBbsrp3q8J9+EXXkhWTvNLA3feEl/HeCpYQmRAp6zgtadYpR ZQMeFB3pcoR935idPDv2VjfafuQNNpcoqEedpNFR7IDzVcJ5VMDqqjjyVVe/7TYE 43Jx4dAFr7Y4Tu1jksuK9c98ukpP15eTKz86PLaTtVFPHW0TuRkf3YiOBJmNGQvK ZzzGOPCXbOpXVqxJGyfdcooedJ+JR886ZuK79Z+bj3iScRtX82zB+w3DawU7wO37 dT7LZe25OgC7wCl9jmh39T+szoWuw2jydQzo8G6/dDiyQIlqcHbGNL3YNGoO32Cd 6MV78n0UurgLPyMAOiOLwlM0UlPBoQ95O6QmJLwdj9DMTBfEAzu5VcKVBEplyTdc jRm/VovBFg== =aVg9 -----END PGP SIGNATURE-----
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