Your message dated Mon, 30 Nov 2020 12:29:16 +0100
with message-id
<CAD=WrcLeqYHjRBRVPBZWr0VHVLKDG1+x-Su=rr+ungsya0e...@mail.gmail.com>
and subject line Re: python-cogent ftbfs with python3.9 as supported python3
version
has caused the Debian Bug report #972504,
regarding python-cogent ftbfs with python3.9 as supported python3 version
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
972504: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972504
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:python-cogent
Version: 2020.2.7a+dfsg-2
Severity: serious
Tags: sid bullseye
User: debian-pyt...@lists.debian.org
Usertags: python3.9
python-cogent ftbfs with python3.9 as supported python3 version:
[...]
======================================================================
ERROR: test_dendro_shape (tests.test_draw.test_dendrogram.TestDendro)
exercising using different values of shape parameter
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_draw/test_dendrogram.py",
line 125, in test_dendro_shape
fig = dnd.figure
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/draw/drawable.py",
line 221, in figure
self.layout.xaxis.title = xtitle
AttributeError: 'dict' object has no attribute 'title'
======================================================================
ERROR: test_annotated_dotplot_remove_tracks
(tests.test_draw.test_draw_integration.AlignmentDrawablesTests)
removing annotation tracks from dotplot should work
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_draw/test_draw_integration.py",
line 209, in test_annotated_dotplot_remove_tracks
orig_fig = dp.figure
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/draw/drawable.py",
line 564, in figure
result = func()
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/draw/drawable.py",
line 355, in _build_2x2_fig
_ = self._build_fig(xaxis="x2", yaxis="y2")
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/draw/drawable.py",
line 326, in _build_fig
f = self.core.figure
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/draw/drawable.py",
line 221, in figure
self.layout.xaxis.title = xtitle
AttributeError: 'dict' object has no attribute 'title'
======================================================================
ERROR: test_count_gaps_per_seq
(tests.test_draw.test_draw_integration.AlignmentDrawablesTests)
creation of drawables works
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_draw/test_draw_integration.py",
line 241, in test_count_gaps_per_seq
self._check_drawable_styles(aln.count_gaps_per_seq, styles)
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_draw/test_draw_integration.py",
line 140, in _check_drawable_styles
self._check_drawable_attrs(obj.drawable.figure, style)
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/draw/drawable.py",
line 222, in figure
self.layout.yaxis.title = ytitle
AttributeError: 'dict' object has no attribute 'title'
======================================================================
ERROR: test_dotplot_annotated
(tests.test_draw.test_draw_integration.AlignmentDrawablesTests)
alignment with / without annotated seqs
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_draw/test_draw_integration.py",
line 174, in test_dotplot_annotated
self._check_drawable_attrs(dp.figure, "scatter")
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/draw/drawable.py",
line 221, in figure
self.layout.xaxis.title = xtitle
AttributeError: 'dict' object has no attribute 'title'
======================================================================
ERROR: test_dotplot_regression
(tests.test_draw.test_draw_integration.AlignmentDrawablesTests)
Tests whether dotplot produces traces and in correct ordering. Also tests if
pop_trace() works
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_draw/test_draw_integration.py",
line 148, in test_dotplot_regression
_ = dp.figure
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/draw/drawable.py",
line 221, in figure
self.layout.xaxis.title = xtitle
AttributeError: 'dict' object has no attribute 'title'
======================================================================
ERROR: test_union (tests.test_util.test_union_dict.UnionDictTests)
correctly adjust a prob vector so all values > minval
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/util/union_dict.py",
line 47, in __getattr__
result = super().__getattr__(item)
AttributeError: 'super' object has no attribute '__getattr__'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_util/test_union_dict.py",
line 63, in test_union
self.assertEqual(d.d.e, 5)
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/util/union_dict.py",
line 49, in __getattr__
raise AttributeError(f"'{item}' not a key or attribute")
AttributeError: 'e' not a key or attribute
======================================================================
FAIL: test_logo (tests.test_core.test_profile.MotifFreqsArrayTests)
produces a Drawable with correct layout elements
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_core/test_profile.py",
line 368, in test_logo
self.assertTrue(len(fig.layout.xaxis) > 10)
AssertionError: False is not true
======================================================================
FAIL: test_layout_with_titles
(tests.test_draw.test_draw_integration.CustomDrawable)
if provided layout has axis titles, keep them
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_draw/test_draw_integration.py",
line 118, in test_layout_with_titles
self.assertEqual(fig.layout.xaxis.title, "X")
AssertionError: None != 'X'
======================================================================
FAIL: test_union_with_empty_sub_dict
(tests.test_util.test_union_dict.UnionDictTests)
unioning with a dict that has an empty sub-dict
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/tests/test_util/test_union_dict.py",
line 83, in test_union_with_empty_sub_dict
self.assertEqual(e, f)
File
"/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build/cogent3/util/unit_test.py",
line 327, in failUnlessEqual
raise self.failureException(
AssertionError: Got {'title': {}}, but expected {'title': {'text': 'Alignment
Position'}}
----------------------------------------------------------------------
Ran 2285 tests in 122.544s
FAILED (failures=3, errors=6, skipped=1)
E: pybuild pybuild:352: test: plugin distutils failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_cogent3/build; python3.9 -m unittest
discover -v
--- End Message ---
--- Begin Message ---
Version: 2020.6.30a0+dfsg-1
Forgot to mark this in the changelong
--
Michael R. Crusoe
--- End Message ---
