Your message dated Tue, 10 Nov 2020 22:31:17 +0200
with message-id <20201110203117.GA26402@localhost>
and subject line Re: Bug#972137: r-bioc-tcgabiolinks: autopkgtest regression
has caused the Debian Bug report #972137,
regarding r-bioc-tcgabiolinks: autopkgtest regression
to be marked as done.
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972137: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=972137
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--- Begin Message ---
Source: r-bioc-tcgabiolinks
Version: 2.16.4+dfsg-1
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: regression
Hi Maintainer
Since 2020-10-08, the autopkgtest of r-bioc-tcgabiolinks has been failing [1].
I've copied what I hope is the relevant part of the log below.
Does this autopkgtest download data? If so, please add the
'needs-internet' [2] restriction to debian/tests/control, or even skip
that particular test.
Regards
Graham
[1] https://ci.debian.net/packages/r/r-bioc-tcgabiolinks/testing/amd64/
[2]
https://salsa.debian.org/ci-team/autopkgtest/raw/master/doc/README.package-tests.rst
── 1. Error: Preparing HT_HG-U133A as SE works (@test-prepare-download.R#193) ─
failed to get URL after 3 tries:
error: SSL certificate problem: unable to get local issuer certificate
Backtrace:
1. TCGAbiolinks::GDCprepare(query, summarizedExperiment = TRUE)
2. TCGAbiolinks:::readGeneExpressionQuantification(...)
3. TCGAbiolinks:::makeSEfromGeneExpressionQuantification(...)
4. TCGAbiolinks::get.GRCh.bioMart(genome)
--- End Message ---
--- Begin Message ---
Version: 2.18.0+dfsg-1
On Tue, Oct 13, 2020 at 08:36:21AM +0200, Graham Inggs wrote:
> Source: r-bioc-tcgabiolinks
> Version: 2.16.4+dfsg-1
> Severity: serious
> Tags: sid bullseye
> X-Debbugs-CC: debian...@lists.debian.org
> User: debian...@lists.debian.org
> Usertags: regression
>
> Hi Maintainer
>
> Since 2020-10-08, the autopkgtest of r-bioc-tcgabiolinks has been failing [1].
>...
This seems to be fixed in the latest version:
https://ci.debian.net/packages/r/r-bioc-tcgabiolinks/
> Regards
> Graham
>...
cu
Adrian
--- End Message ---
