Your message dated Fri, 06 Nov 2020 10:49:57 +0000
with message-id <e1kazjd-0007g5...@fasolo.debian.org>
and subject line Bug#950929: fixed in python-biom-format 2.1.9-1
has caused the Debian Bug report #950929,
regarding python-biom-format: FTBFS with pandas 1.0: test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
950929: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=950929
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-biom-format
Version: 2.1.8+dfsg-1
Control: block 950430 by -1
With pandas 1.0 from experimental:
======================================================================
ERROR: test_to_dataframe (biom.tests.test_table.TableTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/build/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py",
line 1476, in test_to_dataframe
exp = pd.SparseDataFrame(np.array([[0.0, 1.0, 2.0], [3.0, 4.0, 5.0]]),
TypeError: SparseDataFrame() takes no arguments
======================================================================
ERROR: test_to_dataframe_is_sparse (biom.tests.test_table.TableTests)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/build/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/tests/test_table.py",
line 1484, in test_to_dataframe_is_sparse
df = example_table.to_dataframe()
File
"/build/python-biom-format-2.1.8+dfsg/.pybuild/cpython3_3.8_biom-format/build/biom/table.py",
line 4053, in to_dataframe
return constructor(mat, index=index, columns=columns)
TypeError: SparseDataFrame() takes no arguments
----------------------------------------------------------------------
Ran 343 tests in 5.493s
--- End Message ---
--- Begin Message ---
Source: python-biom-format
Source-Version: 2.1.9-1
Done: cru...@debian.org (Michael R. Crusoe)
We believe that the bug you reported is fixed in the latest version of
python-biom-format, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 950...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated python-biom-format
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 06 Nov 2020 11:23:23 +0100
Source: python-biom-format
Architecture: source
Version: 2.1.9-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 950929
Changes:
python-biom-format (2.1.9-1) unstable; urgency=medium
.
* Team Upload.
.
[ Andreas Tille ]
* New upstream version
Closes: #950929
* Build-Depends: python3-pytest
.
[ Michael R. Crusoe ]
* Build-Depends: python3-pytest-cov
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