Hi,
while upstream has closed the according issue #837 I was running into a
different error which is not connected to pandas but probably connected
to the change of the test framework (python3-pytest was requested). When
trying to build I was running into
...
dh_auto_test -O--buildsystem=pybuild
pybuild --test --test-pytest -i python{version} -p "3.9 3.8"
I: pybuild pybuild:284: cp -r /build/python-biom-format-2.1.9/examples
/build/python-biom-format-2.1.9/.pybuild/cpython3_3.9_biom-format/build
I: pybuild base:232: cd
/build/python-biom-format-2.1.9/.pybuild/cpython3_3.9_biom-format/build;
python3.9 -m pytest
ERROR: usage: pytest.py [options] [file_or_dir] [file_or_dir] [...]
pytest.py: error: unrecognized arguments: --cov=biom
inifile: /build/python-biom-format-2.1.9/pytest.ini
rootdir: /build/python-biom-format-2.1.9
E: pybuild pybuild:353: test: plugin distutils failed with: exit code=4: cd
/build/python-biom-format-2.1.9/.pybuild/cpython3_3.9_biom-format/build;
python3.9 -m pytest
I: pybuild pybuild:284: cp -r /build/python-biom-format-2.1.9/examples
/build/python-biom-format-2.1.9/.pybuild/cpython3_3.8_biom-format/build
I: pybuild base:232: cd
/build/python-biom-format-2.1.9/.pybuild/cpython3_3.8_biom-format/build;
python3.8 -m pytest
ERROR: usage: pytest.py [options] [file_or_dir] [file_or_dir] [...]
pytest.py: error: unrecognized arguments: --cov=biom
inifile: /build/python-biom-format-2.1.9/pytest.ini
rootdir: /build/python-biom-format-2.1.9
E: pybuild pybuild:353: test: plugin distutils failed with: exit code=4: cd
/build/python-biom-format-2.1.9/.pybuild/cpython3_3.8_biom-format/build;
python3.8 -m pytest
rm -fr -- /tmp/dh-xdg-rundir-cbDKiY_1
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.9
3.8" returned exit code 13
make: *** [debian/rules:19: binary] Error 25
Any help is welcome - feel free to upload yourself if you
find a fix
Andreas.
[1] https://github.com/biocore/biom-format/issues/837
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