Your message dated Sun, 01 Nov 2020 10:52:46 +0800
with message-id <b66b37ff77049eeb0e35c54c00364...@debian.org>
and subject line Re: Bug#973482: petsc: f951: out of memory allocating 140
bytes after a total of 1874202624 bytes
has caused the Debian Bug report #973482,
regarding petsc: f951: out of memory allocating 140 bytes after a total of
1874202624 bytes
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
973482: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=973482
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: petsc
Version: 3.14.0+dfsg1-3
Severity: serious
Tags: ftbfs sid bullseye
Justification: fails to build from source (but built successfully in the past)
X-Debbugs-Cc: sramac...@debian.org
The build on mipsel failed:
| mpif90 -c -g -O2 -fstack-protector-strong -fPIC -ffree-line-length-0
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre
-I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist
-I/usr/include/scotch -I/usr/include/hdf5/openmpi -MMD -MP
/<<PKGBUILDDIR>>/src/sys/classes/bag/f2003-src/fsrc/bagenum.F90 -o
mipsel-linux-gnu-real-debug/obj/sys/classes/bag/f2003-src/fsrc/bagenum.o
-J/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include
| mpicc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security
-fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre
-I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist
-I/usr/include/scotch -I/usr/include/hdf5/openmpi -Wdate-time
-D_FORTIFY_SOURCE=2 -MMD -MP
/<<PKGBUILDDIR>>/src/tao/leastsquares/impls/brgn/brgn.c -o
mipsel-linux-gnu-real-debug/obj/tao/leastsquares/impls/brgn/brgn.o
| mpif90 -c -g -O2 -fstack-protector-strong -fPIC -ffree-line-length-0
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre
-I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist
-I/usr/include/scotch -I/usr/include/hdf5/openmpi -MMD -MP
/<<PKGBUILDDIR>>/src/sys/objects/f2003-src/fsrc/optionenum.F90 -o
mipsel-linux-gnu-real-debug/obj/sys/objects/f2003-src/fsrc/optionenum.o
-J/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include
| mpicc -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security
-fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre
-I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist
-I/usr/include/scotch -I/usr/include/hdf5/openmpi -Wdate-time
-D_FORTIFY_SOURCE=2 -MMD -MP
/<<PKGBUILDDIR>>/src/tao/leastsquares/impls/pounders/pounders.c -o
mipsel-linux-gnu-real-debug/obj/tao/leastsquares/impls/pounders/pounders.o
| mpif90 -c -g -O2 -fstack-protector-strong -fPIC -ffree-line-length-0
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre
-I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist
-I/usr/include/scotch -I/usr/include/hdf5/openmpi -MMD -MP
/<<PKGBUILDDIR>>/src/vec/f90-mod/petscvecmod.F90 -o
mipsel-linux-gnu-real-debug/obj/vec/f90-mod/petscvecmod.o
-J/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include
| mpif90 -c -g -O2 -fstack-protector-strong -fPIC -ffree-line-length-0
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -I/<<PKGBUILDDIR>>/include
-I/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include -I/usr/include/hypre
-I/usr/include/suitesparse -I/usr/include/superlu -I/usr/include/superlu-dist
-I/usr/include/scotch -I/usr/include/hdf5/openmpi -MMD -MP
/<<PKGBUILDDIR>>/src/mat/f90-mod/petscmatmod.F90 -o
mipsel-linux-gnu-real-debug/obj/mat/f90-mod/petscmatmod.o
-J/<<PKGBUILDDIR>>/mipsel-linux-gnu-real-debug/include
|
| f951: out of memory allocating 140 bytes after a total of 1874202624 bytes
| gmake[5]: *** [gmakefile:207:
mipsel-linux-gnu-real-debug/obj/mat/f90-mod/petscmatmod.o] Error 1
| gmake[4]: *** [/<<PKGBUILDDIR>>/lib/petsc/conf/rules:49: libs] Error 2
| [1;31m**************************ERROR*************************************
| Error during compile, you need to increase the memory allocated to the VM
and rerun
|
********************************************************************[0;39m[0;49m
| gmake[3]: *** [makefile:40: all] Error 1
See
https://buildd.debian.org/status/fetch.php?pkg=petsc&arch=mipsel&ver=3.14.0%2Bdfsg1-3&stamp=1604119704&raw=0
Cheers
--
Sebastian Ramacher
signature.asc
Description: PGP signature
--- End Message ---
--- Begin Message ---
Control: fixed 973482 3.14.0+dfsg1-4
mipsel is weak, and the fortran modules cause mipsel to run out of
working memory once they get too large (requiring MEM near the 2GB
mark).
The workaround is to split the fortran module file (petscmatmod in this
case, in the mat component) so its components can be processed
separately.
This has happened before, with ksp. Likely it will eventually happen
again in other component.
Patch applied in 3.14.0+dfsg1-4.
Drew
--- End Message ---
