Your message dated Sat, 31 Oct 2020 14:10:36 +0000 with message-id <e1kyraw-0005p3...@fasolo.debian.org> and subject line Bug#973027: fixed in rdkit 202003.4-3 has caused the Debian Bug report #973027, regarding rdkit: FTBFS in unstable with postgresql 13 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 973027: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=973027 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: rdkit Version: 202003.4-2 Severity: serious Tags: ftbfs sid Hello, rdkit FTBFS in unstable with postgresql 13. From [1]: dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean pg_buildext checkcontrol --- debian/control 2020-09-22 08:32:21.000000000 -1200 +++ debian/control.cexQZ6 2021-11-25 14:26:59.459300200 -1200 @@ -159,10 +159,10 @@ . This package contains the header files. -Package: postgresql-12-rdkit +Package: postgresql-13-rdkit Architecture: any Section: database -Depends: ${misc:Depends}, ${shlibs:Depends}, postgresql-12 +Depends: ${misc:Depends}, ${shlibs:Depends}, postgresql-13 Suggests: Description: Cheminformatics and machine-learning software (PostgreSQL Cartridge) RDKit is a Python/C++ based cheminformatics and machine-learning software Error: debian/control needs updating from debian/control.in. Run 'pg_buildext updatecontrol'. If you are seeing this message in a buildd log, a sourceful upload is required. make: *** [/usr/share/postgresql-common/pgxs_debian_control.mk:9: debian/control] Error 1 However, replacing s/postgresql-12/postgresql-13/ does not fix the issue as rdkit seemingly uses no longer present postgresql header file: gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Werror=vla -Wendif-labels -Wmissing-format-attribute -Wimplicit-fallthrough=3 -W format-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -W format -Werror=format-security -fno-omit-frame-pointer -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/<<PKGBUILDDIR>>/Code -DRDKITVER='"007300"' -I. -I/<<PKGBUILDDIR>>/Code/PgSQL/rdkit -I/usr/incl ude/postgresql/13/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -fPIC -c -o rdkit_gist.o /< <PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c /<<PKGBUILDDIR>>/Code/PgSQL/rdkit/rdkit_gist.c:35:10: fatal error: access/tuptoaster.h: No such file or directory 35 | #include <access/tuptoaster.h> | ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. make[2]: *** [/<<PKGBUILDDIR>>/Code/PgSQL/rdkit/Makefile:109: rdkit_gist.o] Error 1 Andrius [1] https://tests.reproducible-builds.org/debian/rbuild/unstable/amd64/rdkit_202003.4-2.rbuild.log.gz
--- End Message ---
--- Begin Message ---Source: rdkit Source-Version: 202003.4-3 Done: Andrius Merkys <mer...@debian.org> We believe that the bug you reported is fixed in the latest version of rdkit, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 973...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andrius Merkys <mer...@debian.org> (supplier of updated rdkit package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 28 Oct 2020 09:10:34 -0400 Source: rdkit Binary: librdkit-dev librdkit1 librdkit1-dbgsym postgresql-13-rdkit postgresql-13-rdkit-dbgsym python3-rdkit python3-rdkit-dbgsym rdkit-data rdkit-doc Architecture: source amd64 all Version: 202003.4-3 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Andrius Merkys <mer...@debian.org> Description: librdkit-dev - Collection of cheminformatics and machine-learning software (deve librdkit1 - Collection of cheminformatics and machine-learning software (shar postgresql-13-rdkit - Cheminformatics and machine-learning software (PostgreSQL Cartrid python3-rdkit - Collection of cheminformatics and machine-learning software rdkit-data - Collection of cheminformatics and machine-learning software (data rdkit-doc - Collection of cheminformatics and machine-learning software (docu Closes: 973027 Changes: rdkit (202003.4-3) unstable; urgency=medium . * Team upload. * Updating postgresql version (Closes: #973027). Checksums-Sha1: 016324b706a59fa126d6194b95a3ef279461eb1f 2782 rdkit_202003.4-3.dsc 09af43f2abaf6e0a0000389642ce70374790b35d 52894168 rdkit_202003.4.orig.tar.xz faf04c579b988f2c526dc4f21da468b9449d73c9 99852 rdkit_202003.4-3.debian.tar.xz aa2b70d9facea59d79b78bf3406087fed2441b9b 325188 librdkit-dev_202003.4-3_amd64.deb dd524195755fa67ea495bf31b3e7411df86c194f 81576964 librdkit1-dbgsym_202003.4-3_amd64.deb c0600181787b23d87f8526069c0a5b9de3a2ff87 3143052 librdkit1_202003.4-3_amd64.deb 675be79d28951da9410686c4947e01c692d24ddd 836836 postgresql-13-rdkit-dbgsym_202003.4-3_amd64.deb f788a8ac27dbe02d177f4a4ea2d9ce839fd17a54 363780 postgresql-13-rdkit_202003.4-3_amd64.deb ca9726491a572db6f4e66d72289d05f1b6ea6661 59078832 python3-rdkit-dbgsym_202003.4-3_amd64.deb 91677d13848196f2f50747a38f8032e43fb78c40 3381724 python3-rdkit_202003.4-3_amd64.deb 424df508a68d22350a76c6a6af6af1113863e566 6784780 rdkit-data_202003.4-3_all.deb 446bad909a9db389d89f70d13548803235f6d983 5035148 rdkit-doc_202003.4-3_all.deb c0bd88cabad9eb6c748c807309f4aec71ce607cd 16861 rdkit_202003.4-3_amd64.buildinfo Checksums-Sha256: 2bb4ebef558b398e05fce0f47aeb025062dead9adad036119d6b6e4ec49716e8 2782 rdkit_202003.4-3.dsc 0b2b98142c1c9e79a38f4ab604a03c3b7f52715c88b8fb530c07564c1b155da0 52894168 rdkit_202003.4.orig.tar.xz 6d0b533afcb5efc6df935f6d768d7db85cb2ccca670444039424379512556c72 99852 rdkit_202003.4-3.debian.tar.xz 21c4ab9825400fdaf10070b5c38abffdc28c433b666092f0e107ebf44d9759e5 325188 librdkit-dev_202003.4-3_amd64.deb 698a2d257ed48d6e53de4e724582bf3bfe839ad3f6d6de29d47f2da3c186b46f 81576964 librdkit1-dbgsym_202003.4-3_amd64.deb 16757ebb1714c1d5bd8d0b8d17ddb2f66f28ef3ff7a42c65d043764daa321eb9 3143052 librdkit1_202003.4-3_amd64.deb e310175273ba173ee3a52c811ca8ce7785def9287af9a2d97aafa2a4640c21ee 836836 postgresql-13-rdkit-dbgsym_202003.4-3_amd64.deb e75a7602cd2af31414a3358727a0056126661a593faf9534d485586d13af7fbf 363780 postgresql-13-rdkit_202003.4-3_amd64.deb e19843926f094d695c57e865e8510380eb610f84589cb0069b950fd07015be19 59078832 python3-rdkit-dbgsym_202003.4-3_amd64.deb 2958ff9b5f62e9130febec4b91a3e725bafba95929402fe5e4ef711b1399e71a 3381724 python3-rdkit_202003.4-3_amd64.deb 8a3a632f7ed011665281507dff73b1265be994267fffdc966a2ae0e5695d2673 6784780 rdkit-data_202003.4-3_all.deb b3c89ac04184b842bf0ce13be61c8446e91e3d582f840e8988e0ef391e115002 5035148 rdkit-doc_202003.4-3_all.deb 74ec709cb6c04e5287a1f7817dc3bd2b4e92ba1192b9d68a85d167264836c083 16861 rdkit_202003.4-3_amd64.buildinfo Files: dd842f9e332560a7acbed5b5cf3ccc85 2782 science optional rdkit_202003.4-3.dsc 0b982f0567447be4b8663b60407441e4 52894168 science optional rdkit_202003.4.orig.tar.xz b36f080ed7edb16701e731100c6110c9 99852 science optional rdkit_202003.4-3.debian.tar.xz b1d26e7c73bd7f1c39b4249b6d630a37 325188 libdevel optional librdkit-dev_202003.4-3_amd64.deb dab380bf03ae98a17ec62ec549157b59 81576964 debug optional librdkit1-dbgsym_202003.4-3_amd64.deb 46c2d59d28080b0cf87971075556de94 3143052 libs optional librdkit1_202003.4-3_amd64.deb 732eba5ae5cbdbb193efc09aeaa1e574 836836 debug optional postgresql-13-rdkit-dbgsym_202003.4-3_amd64.deb 1a5d3f42fce971c652e446a107261da9 363780 database optional postgresql-13-rdkit_202003.4-3_amd64.deb ed92d07f595a684cfc4d93163f00f12a 59078832 debug optional python3-rdkit-dbgsym_202003.4-3_amd64.deb 83a93ec4b78b83c1be03e2d8553bc8ef 3381724 python optional python3-rdkit_202003.4-3_amd64.deb 3429468e5b7aed72e0aa6e9c3c30e3bf 6784780 science optional rdkit-data_202003.4-3_all.deb dfa3fe5c1f78b39ed581b092a9ffa705 5035148 doc optional rdkit-doc_202003.4-3_all.deb ababf7b0af7866afa1122497d6d3e990 16861 science optional rdkit_202003.4-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAl+cHVUSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHzu4P/RV7G3dewB4lTMOyx4cVFFEtNr33pWfl wJVAr9zFMB8f2gI2pnc0PdoIdy32vG1u2EzepGMxbapNUV2dpgYXGdQvDJjQ6W6k nZrQYtHe4pksTEprszICyqyMIrSKUZWl8crtPhotGF2qNmRy04Umu2g5i9d3rBmJ 0J/OLgmtsVI3s8bsQNSraza3Z20IUJimu+EwLknx1ug9+KAwDHI1O8h2whcvu7Dn O6ldwsNU+pqINU7VJPPOt4Fr6PDiCsxFnDlP2mvrBmxBMb8AdRhBcsXKDeonNvdA 70/J0Rri5oWgmHYWilFP7IAm7p9ixU+yBT/YCqDGsSWdpvMhhpEy+jApmhYIaRak 5BYwngUWMSp5zA9GBBDl1oqoDQ/bLhC2kX+EfrvMyphUUf3ygXVEFo2B2EtbCjO9 7ibPhujiatZR9UpLbxH9QqN7W0RPonx7Xwq7NKJ7Ps8NwCh08OgPeAeF2fcgqF1k k8yEJknB/0m0TDniVEAw9VafX0VJjq/rD+bRailBU/MTEOS9gz4ym1cxeIrtXBiV 140mxnPX/aoshl0AC8PxWK7Z3Q1Uhlk9FAO6t3J7F9g0aL4Nbk7tVqq8cEfb3Mje Hbp8mnrP74gvUucIjrs5krJb9CJ2dFocLbZNpiuMy1r7l5pMbBQ78UQILBWLrjql oSQ9Wx26s6de =+Haf -----END PGP SIGNATURE-----
--- End Message ---
