Your message dated Thu, 15 Oct 2020 06:07:27 +0000
with message-id <e1kswqb-00013a...@fasolo.debian.org>
and subject line Bug#971669: fixed in openmpi 4.0.5-7
has caused the Debian Bug report #971669,
regarding libopenmpi3: armel mipsel: mca_pmix_pmix3x.so: undefined symbol:
OPAL_MCA_PMIX3X_PMIx_Get_version
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
971669: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=971669
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libopenmpi3
Version: 4.0.5-5
Severity: important
Control: affects -1 src:mumps
The builds of mumps on armel and mipsel are failing with this runtime
test error:
mpifort -o multiple_arithmetics_example -Wl,-z,relro
multiple_arithmetics_example.o /<<PKGBUILDDIR>>/lib/libsmumps.so
/<<PKGBUILDDIR>>/lib/libmumps_common.so /<<PKGBUILDDIR>>/lib/libdmumps.so
/<<PKGBUILDDIR>>/lib/libmumps_common.so /<<PKGBUILDDIR>>/lib/libcmumps.so
/<<PKGBUILDDIR>>/lib/libmumps_common.so /<<PKGBUILDDIR>>/lib/libzmumps.so
/<<PKGBUILDDIR>>/lib/libmumps_common.so -L/<<PKGBUILDDIR>>/lib -lpord
-lscalapack-openmpi -llapack -lblas -lpthread
make[2]: Leaving directory '/<<PKGBUILDDIR>>/examples'
=== running c_example (serial) ===
OpenCL: Failed to get number of platforms with clGetPlatformIDs(): -1001
[arm-ubc-04:29759] mca_base_component_repository_open: unable to open
mca_pmix_pmix3x:
/usr/lib/arm-linux-gnueabi/openmpi/lib/openmpi3/mca_pmix_pmix3x.so: undefined
symbol: OPAL_MCA_PMIX3X_PMIx_Get_version (ignored)
[arm-ubc-04:29759] [[26335,0],0] ORTE_ERROR_LOG: Not found in file
../../../../../../orte/mca/ess/hnp/ess_hnp_module.c at line 320
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):
opal_pmix_base_select failed
--> Returned value Not found (-13) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
[arm-ubc-04:29758] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a
daemon on the local node in file
../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 716
[arm-ubc-04:29758] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a
daemon on the local node in file
../../../../../../orte/mca/ess/singleton/ess_singleton_module.c at line 172
(the OpenCL message is just a warning, it appears also in the
successful amd64 build)
It looks like there is an inconsistency in the openmpi build on armel
and mipsel with respect to the pmix libraries.
The file cited, mca_pmix_pmix3x.so, is shipped in the armel and mipsel
builds of libopenmpi3, which provide
mca_pmix_flux.so
mca_pmix_isolated.so
mca_pmix_pmix3x.so
but is not present on other arches, which provide
mca_pmix_ext3x.so
mca_pmix_flux.so
mca_pmix_isolated.so
-- System Information:
Debian Release: bullseye/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 5.8.0-2-amd64 (SMP w/8 CPU threads)
Locale: LANG=en_AU.UTF-8, LC_CTYPE=en_AU.UTF-8 (charmap=UTF-8),
LANGUAGE=en_AU:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages libopenmpi3 depends on:
ii libc6 2.31-3
ii libevent-core-2.1-7 2.1.12-stable-1
ii libevent-pthreads-2.1-7 2.1.12-stable-1
ii libfabric1 1.11.0-2
ii libgcc-s1 10.2.0-13
ii libhwloc-plugins 2.3.0+dfsg-1
ii libhwloc15 2.3.0+dfsg-1
ii libibverbs1 31.0-1
ii libnl-3-200 3.4.0-1+b1
ii libpmix2 3.2.0~rc1-4
ii libpsm-infinipath1 3.3+20.604758e7-6+b1
ii libpsm2-2 11.2.185-1
ii libstdc++6 10.2.0-13
ii libucx0 1.9.0~rc1-2
ii zlib1g 1:1.2.11.dfsg-2
libopenmpi3 recommends no packages.
libopenmpi3 suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: openmpi
Source-Version: 4.0.5-7
Done: Alastair McKinstry <mckins...@debian.org>
We believe that the bug you reported is fixed in the latest version of
openmpi, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 971...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alastair McKinstry <mckins...@debian.org> (supplier of updated openmpi package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 14 Oct 2020 20:08:08 +0100
Source: openmpi
Architecture: source
Version: 4.0.5-7
Distribution: unstable
Urgency: medium
Maintainer: Alastair McKinstry <mckins...@debian.org>
Changed-By: Alastair McKinstry <mckins...@debian.org>
Closes: 971669
Changes:
openmpi (4.0.5-7) unstable; urgency=medium
.
* Undo NO_PMIX_ARCH for armel, mipsel no longer needed as atomic
primitives now provided in external pmix. Closes: #971669
Checksums-Sha1:
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Files:
89696237137688e3bb5f4db509f9dc56 2679 net optional openmpi_4.0.5-7.dsc
9769e05e7600c2652e3d37dbf3b825e6 66980 net optional
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--- End Message ---
