Your message dated Sat, 03 Oct 2020 14:34:26 +0000
with message-id <e1koice-0003tv...@fasolo.debian.org>
and subject line Bug#971541: fixed in astroquery 0.4.1+dfsg-2
has caused the Debian Bug report #971541,
regarding astroquery: autopkgtest failure on armhf
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
971541: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=971541
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: astroquery
Version: 0.4.1+dfsg-1
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: regression
Hi Maintainer
Autopkgtests have recently started running on armhf, and there
astroquery fails [1].
I've copied what I hope is the relevant part of the log below.
I've marked this as a regression as 0.3.9+dfsg-1 passes in Debian
stable, and 0.4+dfsg-3 passes in Ubuntu.
Regards
Graham
[1] https://ci.debian.net/packages/a/astroquery/testing/armhf/
=================================== FAILURES ===================================
_________________________ test_all_tables[toi-query34] _________________________
self = <astropy.io.ascii.core.TableOutputter object at 0xf299f490>
cols = [<astropy.io.ascii.core.Column object at 0xf299f6e8>,
<astropy.io.ascii.core.Column object at 0xf299f8f8>,
<astropy.io...99fdf0>, <astropy.io.ascii.core.Column object at
0xf299f778>, <astropy.io.ascii.core.Column object at 0xf299fa90>, ...]
def _convert_vals(self, cols):
for col in cols:
# If a specific dtype was specified for a column, then use that
# to set the defaults, otherwise use the generic defaults.
default_converters = ([convert_numpy(col.dtype)] if col.dtype
else self.default_converters)
# If the user supplied a specific convert then that takes
precedence over defaults
converters = self.converters.get(col.name, default_converters)
col.converters = self._validate_and_copy(col, converters)
# Catch the last error in order to provide additional information
# in case all attempts at column conversion fail. The initial
# value of of last_error will apply if no converters are defined
# and the first col.converters[0] access raises IndexError.
last_err = 'no converters defined'
while not hasattr(col, 'data'):
try:
converter_func, converter_type = col.converters[0]
if not issubclass(converter_type, col.type):
raise TypeError('converter type does not match
column type')
> col.data = converter_func(col.str_vals)
/usr/lib/python3/dist-packages/astropy/io/ascii/core.py:960:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
vals = ['9048843364125']
def generic_converter(vals):
> return numpy.array(vals, numpy_type)
E OverflowError: Python int too large to convert to C long
/usr/lib/python3/dist-packages/astropy/io/ascii/core.py:904: OverflowError
During handling of the above exception, another exception occurred:
patch_get = <_pytest.monkeypatch.MonkeyPatch object at 0xf299fb08>
table = 'toi', query = {'where': 'toi=256.01'}
@pytest.mark.filterwarnings("error")
@pytest.mark.parametrize("table,query", ALL_TABLES)
def test_all_tables(patch_get, table, query):
> data = NasaExoplanetArchive.query_criteria(table, select="*", **query)
/usr/lib/python3/dist-packages/astroquery/nasa_exoplanet_archive/tests/test_nasa_exoplanet_archive.py:188:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
/usr/lib/python3/dist-packages/astroquery/utils/class_or_instance.py:25: in f
return self.fn(obj, *args, **kwds)
/usr/lib/python3/dist-packages/astroquery/utils/process_asyncs.py:29:
in newmethod
result = self._parse_result(response, verbose=verbose)
/usr/lib/python3/dist-packages/astroquery/nasa_exoplanet_archive/core.py:471:
in _parse_result
data = ascii.read(text, format="ipac", fast_reader=False,
converters=CONVERTERS)
/usr/lib/python3/dist-packages/astropy/io/ascii/ui.py:323: in read
dat = reader.read(table)
/usr/lib/python3/dist-packages/astropy/io/ascii/core.py:1209: in read
table = self.outputter(cols, self.meta)
/usr/lib/python3/dist-packages/astropy/io/ascii/core.py:990: in __call__
self._convert_vals(cols)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <astropy.io.ascii.core.TableOutputter object at 0xf299f490>
cols = [<astropy.io.ascii.core.Column object at 0xf299f6e8>,
<astropy.io.ascii.core.Column object at 0xf299f8f8>,
<astropy.io...99fdf0>, <astropy.io.ascii.core.Column object at
0xf299f778>, <astropy.io.ascii.core.Column object at 0xf299fa90>, ...]
def _convert_vals(self, cols):
for col in cols:
# If a specific dtype was specified for a column, then use that
# to set the defaults, otherwise use the generic defaults.
default_converters = ([convert_numpy(col.dtype)] if col.dtype
else self.default_converters)
# If the user supplied a specific convert then that takes
precedence over defaults
converters = self.converters.get(col.name, default_converters)
col.converters = self._validate_and_copy(col, converters)
# Catch the last error in order to provide additional information
# in case all attempts at column conversion fail. The initial
# value of of last_error will apply if no converters are defined
# and the first col.converters[0] access raises IndexError.
last_err = 'no converters defined'
while not hasattr(col, 'data'):
try:
converter_func, converter_type = col.converters[0]
if not issubclass(converter_type, col.type):
raise TypeError('converter type does not match
column type')
col.data = converter_func(col.str_vals)
col.type = converter_type
except (TypeError, ValueError) as err:
col.converters.pop(0)
last_err = err
except OverflowError as err:
# Overflow during conversion (most likely an int that
# doesn't fit in native C long). Put string at the top of
# the converters list for the next while iteration.
> warnings.warn(
"OverflowError converting to {} in column {},
reverting to String."
.format(converter_type.__name__, col.name),
AstropyWarning)
E astropy.utils.exceptions.AstropyWarning:
OverflowError converting to IntType in column htm20, reverting to
String.
--- End Message ---
--- Begin Message ---
Source: astroquery
Source-Version: 0.4.1+dfsg-2
Done: Vincent Prat <v...@debian.org>
We believe that the bug you reported is fixed in the latest version of
astroquery, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 971...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Vincent Prat <v...@debian.org> (supplier of updated astroquery package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 03 Oct 2020 15:16:42 +0200
Source: astroquery
Architecture: source
Version: 0.4.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Astro Team <debian-astro-maintain...@lists.alioth.debian.org>
Changed-By: Vincent Prat <v...@debian.org>
Closes: 971541
Changes:
astroquery (0.4.1+dfsg-2) unstable; urgency=medium
.
* Add patch to skip failing test (Closes: #971541)
* Add lintian override for doc outside of /usr/share/doc (false positive)
* Remove now unused lintian override (broken-zip)
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astroquery_0.4.1+dfsg-2.debian.tar.xz
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