Your message dated Tue, 29 Sep 2020 20:39:58 +0000 with message-id <e1knmpm-0003ro...@fasolo.debian.org> and subject line Bug#961382: fixed in hyphy 2.5.18+dfsg-1 has caused the Debian Bug report #961382, regarding hyphy: baseline violation on amd64/i386 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 961382: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961382 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: hyphy Version: 2.2.7+dfsg-1 Severity: serious https://buildd.debian.org/status/package.php?p=hyphy That package in stretch and buster builds with -msse3 for no apparent reason. The package in unstable/testing is built with "-march=native -mtune=native -mavx -mfma".
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--- Begin Message ---Source: hyphy Source-Version: 2.5.18+dfsg-1 Done: =?utf-8?q?=C3=89tienne_Mollier?= <etienne.moll...@mailoo.org> We believe that the bug you reported is fixed in the latest version of hyphy, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 961...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <etienne.moll...@mailoo.org> (supplier of updated hyphy package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 28 Sep 2020 21:33:54 +0200 Source: hyphy Architecture: source Version: 2.5.18+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <etienne.moll...@mailoo.org> Closes: 961382 Changes: hyphy (2.5.18+dfsg-1) unstable; urgency=medium . [ Étienne Mollier ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Build with NOAVX and NOSSE3 cmake switches. (Closes: #961382) * GTEST removed in favor of script run_unit_tests.sh: - updated d/copyright to remove gtest and include src/contrib; - removed note about gtest in d/rules; - removed lintian-overrides related to gtest. * Refreshed patches: - removed drop_profiling_option.patch; - removed patches related to gtest; - refreshed use_debian_sqlite.patch; - added patch to fix compilation issues with NOAVX and NOSSE3; - added patch to allow compilation on non-x86 CPU architectures. * Refreshed d/hyphy-common.install. . [ Andreas Tille ] * d/rules: Remove some settings made for the former Python package Checksums-Sha1: 01912881798fdbd35917d3bc2736637b211506e5 2222 hyphy_2.5.18+dfsg-1.dsc 55369ca10a57c1b3c1740a33d3aa1ae587989cd9 2406248 hyphy_2.5.18+dfsg.orig.tar.xz d5fa05ed211e14c0e14f62b1a87a5cffbbcef564 9844 hyphy_2.5.18+dfsg-1.debian.tar.xz 4b307ebc6c923c53509f9c297c5db85e9fe15e46 9489 hyphy_2.5.18+dfsg-1_amd64.buildinfo Checksums-Sha256: 434b0cd803d9f13d707d43c2e014032fa471f16889ab862d48b0c393d765fa09 2222 hyphy_2.5.18+dfsg-1.dsc 25c564d5577206e3047f7ed961063ef2a067fb1f1db2e40b084bca7f94d60dfc 2406248 hyphy_2.5.18+dfsg.orig.tar.xz 04c070bf9cf477c8fbb6527d45aa1899dee8475a275762ecfbe6790c8291a209 9844 hyphy_2.5.18+dfsg-1.debian.tar.xz 9927174f39e1f7a3e005c63ad90f769baa5fa743cf2fc79d81512c647bfb7d0b 9489 hyphy_2.5.18+dfsg-1_amd64.buildinfo Files: 966214e2daf26b45464b0ae1c1864cce 2222 science optional hyphy_2.5.18+dfsg-1.dsc 97b7ea11a9120f3954be4b3a3fa8bd65 2406248 science optional hyphy_2.5.18+dfsg.orig.tar.xz 3dd19919ebcb2cb8007414f3aa191e91 9844 science optional hyphy_2.5.18+dfsg-1.debian.tar.xz f8f5ff5d027242dea4fc7ddf5e5e95fa 9489 science optional hyphy_2.5.18+dfsg-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl9zjygRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFLwQ/7BchEwX66y3+DvdoBEDuHyKCuGnmgRhN9 fErX5fhrsvi0OpsOWq8s8bFeXOacERqTHTuI+ydXqyDfKVHdp60EUD88+BIn0kJp aVPwG63YvnU1Iz+hS/fAm+ijTYBNdXLhSYW7CeQpluI5u/zUIJhvrYoDCVGhqTSL 9r440g3jY4ZtIT0dB7YJPAVoPPiwKBeOkgYkOYYK4ghU2ldpFwPrX6CFw1RWOvwW y9Wm0jcFf+6lvX45GcjEHoFbD7vHaGxmJoPl07pKFu3eOkQDzM3vGW+90QHPHmEp f2mgT2sCSc5gOXqwoLViiL1GnIs+nx8++3qr2BkKk9Et2OOmIoArtI7Ap7wFWSOl iHEdrMfQIPRt3Ey9g0xri2d9OPAxa1IYZr8gCgIqYdrU+kssVBBz/UahR3h9CaS3 QYBGF9785vIDx5wVyiRjZod//YwVmyQKjIHDA4EZZjTMS2ZIft227d00BXD51tVS wJdFkeZTS7fb2THReRVdUcF9dfi/ZhLqym+g2edE0skZly3/tD0wuBmFk81Tvr2g byyWHslzBxxWujYN3xZU27XIwWHbVdqY1TRUtJ+9BY52th3OVkSeOoaOBI0mt9C1 eR73tYFXU1qseY5ZWzWzWkazlj/vI+mK751LvaZEu61WeWFQJKZYKhcOC9G4nCMW 1huMAuJ3XhE= =D5Pp -----END PGP SIGNATURE-----
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