Your message dated Wed, 05 Aug 2020 17:04:08 +0000 with message-id <e1k3mpk-000cft...@fasolo.debian.org> and subject line Bug#966868: fixed in igor 1.4.0+dfsg-2 has caused the Debian Bug report #966868, regarding igor: FTBFS: CDR3SeqData.h:20:10: error: ‘string’ in namespace ‘std’ does not name a type to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 966868: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=966868 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: igor Version: 1.4.0+dfsg-1 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200802 ftbfs-bullseye Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 > -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp > -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -c -o igor-ExtractFeatures.o `test -f > 'ExtractFeatures.cpp' || echo './'`ExtractFeatures.cpp > In file included from ExtractFeatures.h:30, > from ExtractFeatures.cpp:26: > CDR3SeqData.h:20:10: error: ‘string’ in namespace ‘std’ does not name a type > 20 | std::string CDR3nt; > | ^~~~~~ > CDR3SeqData.h:1:1: note: ‘std::string’ is defined in header ‘<string>’; did > you forget to ‘#include <string>’? > +++ |+#include <string> > 1 | > CDR3SeqData.h:21:10: error: ‘string’ in namespace ‘std’ does not name a type > 21 | std::string CDR3aa; > | ^~~~~~ > CDR3SeqData.h:21:5: note: ‘std::string’ is defined in header ‘<string>’; did > you forget to ‘#include <string>’? > 21 | std::string CDR3aa; > | ^~~ > CDR3SeqData.h:22:10: error: ‘string’ in namespace ‘std’ does not name a type > 22 | std::string strData(); > | ^~~~~~ > CDR3SeqData.h:22:5: note: ‘std::string’ is defined in header ‘<string>’; did > you forget to ‘#include <string>’? > 22 | std::string strData(); > | ^~~ > g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 > -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp > -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -c -o igor-Genechoice.o `test -f 'Genechoice.cpp' || > echo './'`Genechoice.cpp > g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 > -I/usr/include/jemalloc -I/usr/include/gsl -fopenmp > -DIGOR_DATA_DIR=\"/usr/share/igor\" -g -O2 > -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat > -Werror=format-security -c -o igor-GenModel.o `test -f 'GenModel.cpp' || echo > './'`GenModel.cpp > make[3]: *** [Makefile:635: igor-ExtractFeatures.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/08/02/igor_1.4.0+dfsg-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---Source: igor Source-Version: 1.4.0+dfsg-2 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of igor, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 966...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated igor package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 05 Aug 2020 18:37:57 +0200 Source: igor Architecture: source Version: 1.4.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 966868 Changes: igor (1.4.0+dfsg-2) unstable; urgency=medium . * Team upload. * Fix gcc-10 build Closes: #966868 * debhelper-compat 13 (routine-update) * Do not use outdated libcblas any more Checksums-Sha1: abdbef4bfeca05791819c88b5ba38b2772c34260 2046 igor_1.4.0+dfsg-2.dsc 0a3163c126f6df45ce35f8f2442bd78442fa177f 4988 igor_1.4.0+dfsg-2.debian.tar.xz 70e43deedfc76340bf1e8a2d73091e68cfba707b 5862 igor_1.4.0+dfsg-2_amd64.buildinfo Checksums-Sha256: e1566e44131162f0a4c913d78ba9e6e373ce1645983d9e07945f056271fbadd4 2046 igor_1.4.0+dfsg-2.dsc 5df040205a8e17a221abf16c7e9047a82b150068c56395bdf4fc808e889022ba 4988 igor_1.4.0+dfsg-2.debian.tar.xz 04286b1d92974fb2366abccf8fcb894fc2cdd5e2aa625838911c41ffdd973f90 5862 igor_1.4.0+dfsg-2_amd64.buildinfo Files: 48e37cbe3c8894a841a2dd6028b05028 2046 science optional igor_1.4.0+dfsg-2.dsc 36212942a9b2034bb0f0200a9c4d6e66 4988 science optional igor_1.4.0+dfsg-2.debian.tar.xz f0d5ed0ba0e4c45f0590d1482e03c7c7 5862 science optional igor_1.4.0+dfsg-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8q5CMRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHDEg//b2e9bh6KhRpySsieV5+BSRmsgtxd915g Dps6mC6E/j0ygHi/nfYN25r7ho6+LP8byRmrvYLBIdBcuDzAnURcJrgHA4LKGf7X d7CxD6OMjH3xD7zY9Nsx+ILzErYmsllJGM8Z3Q7zJnGED5Xq/3ljmMkgd6OsYCJZ 90mqfOfuUSk+kNkVLOh/6YUs84pzAwWVfVMy1AAJYnBFcuk3yDCmHynZ4cQGdAFu OSV5vJQ7N4Q/7mNCWCt9SXhWMMKZCoN1qBaKV9EWuy6ekxb2dh6a1J1is4kci6yC qF8X18fhODfg2IhFvWBGrpUQxoq8nAbSNtkirlGi1EaApudZLnkDpXiYIxXO0Hfv 2s68S0sa5y+nukm1JpMDnZ8hMx8TAt+Hp8b1mDM+lXrdBPyYUgOfUYQxT2zJdydj d96stCLB468VgemI7nc1bozkBrFnrDLw4ORi9MQGIlmCn/BApr88ZJCcMO8SLjuW xzVieB8O6YCY9fVW1l4N2hvLeRbN1OYA/cOnZTToUrCCIvkZksrB0n1ITlLv6JYA qyjr3LL+LPwpMuoAEdq+pLC9JRjv836nxCGWiEKy6l6G0NcSHvmAWKIG1fXZsxDb 9Rmjaj5YEQTTE3S5HPogYO19yy/ukPqFe7PrLyGlMz53Vag7uLj0cfV3WbGlnFSD sn+xk+JjXIM= =ZVhF -----END PGP SIGNATURE-----
--- End Message ---
