Your message dated Wed, 29 Jul 2020 09:54:56 +0000
with message-id <e1k0iny-0006dc...@fasolo.debian.org>
and subject line Bug#957772: fixed in saint 2.5.0+dfsg-4
has caused the Debian Bug report #957772,
regarding saint: ftbfs with GCC-10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
957772: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957772
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:saint
Version: 2.5.0+dfsg-3
Severity: normal
Tags: sid bullseye
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-10
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc10-20200225/saint_2.5.0+dfsg-3_unstable_gcc10.log
The last lines of the build log are at the end of this report.
To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-10/porting_to.html
[...]
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/initdata.o:././src/SAINTspc-noctrl/saint.h:246: multiple
definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/initdata.o:././src/SAINTspc-noctrl/saint.h:245: multiple
definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/likelihood.o:././src/SAINTspc-noctrl/saint.h:250:
multiple definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/likelihood.o:././src/SAINTspc-noctrl/saint.h:249:
multiple definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/likelihood.o:././src/SAINTspc-noctrl/saint.h:248:
multiple definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/likelihood.o:././src/SAINTspc-noctrl/saint.h:247:
multiple definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/likelihood.o:././src/SAINTspc-noctrl/saint.h:246:
multiple definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/likelihood.o:././src/SAINTspc-noctrl/saint.h:245:
multiple definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld: /<<PKGBUILDDIR>>/build/mcmc.o:././src/SAINTspc-noctrl/saint.h:250:
multiple definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld: /<<PKGBUILDDIR>>/build/mcmc.o:././src/SAINTspc-noctrl/saint.h:249:
multiple definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld: /<<PKGBUILDDIR>>/build/mcmc.o:././src/SAINTspc-noctrl/saint.h:248:
multiple definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld: /<<PKGBUILDDIR>>/build/mcmc.o:././src/SAINTspc-noctrl/saint.h:247:
multiple definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld: /<<PKGBUILDDIR>>/build/mcmc.o:././src/SAINTspc-noctrl/saint.h:246:
multiple definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld: /<<PKGBUILDDIR>>/build/mcmc.o:././src/SAINTspc-noctrl/saint.h:245:
multiple definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/meancounts.o:././src/SAINTspc-noctrl/saint.h:250:
multiple definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/meancounts.o:././src/SAINTspc-noctrl/saint.h:249:
multiple definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/meancounts.o:././src/SAINTspc-noctrl/saint.h:248:
multiple definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/meancounts.o:././src/SAINTspc-noctrl/saint.h:247:
multiple definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/meancounts.o:././src/SAINTspc-noctrl/saint.h:246:
multiple definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/meancounts.o:././src/SAINTspc-noctrl/saint.h:245:
multiple definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/mmath.o:././src/SAINTspc-noctrl/saint.h:250: multiple
definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/mmath.o:././src/SAINTspc-noctrl/saint.h:249: multiple
definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/mmath.o:././src/SAINTspc-noctrl/saint.h:248: multiple
definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/mmath.o:././src/SAINTspc-noctrl/saint.h:247: multiple
definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/mmath.o:././src/SAINTspc-noctrl/saint.h:246: multiple
definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/mmath.o:././src/SAINTspc-noctrl/saint.h:245: multiple
definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/printmap.o:././src/SAINTspc-noctrl/saint.h:250: multiple
definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/printmap.o:././src/SAINTspc-noctrl/saint.h:249: multiple
definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/printmap.o:././src/SAINTspc-noctrl/saint.h:248: multiple
definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/printmap.o:././src/SAINTspc-noctrl/saint.h:247: multiple
definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/printmap.o:././src/SAINTspc-noctrl/saint.h:246: multiple
definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/printmap.o:././src/SAINTspc-noctrl/saint.h:245: multiple
definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/result.o:././src/SAINTspc-noctrl/saint.h:250: multiple
definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/result.o:././src/SAINTspc-noctrl/saint.h:249: multiple
definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/result.o:././src/SAINTspc-noctrl/saint.h:248: multiple
definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/result.o:././src/SAINTspc-noctrl/saint.h:247: multiple
definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/result.o:././src/SAINTspc-noctrl/saint.h:246: multiple
definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/result.o:././src/SAINTspc-noctrl/saint.h:245: multiple
definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/saint.o:././src/SAINTspc-noctrl/saint.h:245: multiple
definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/saint.o:././src/SAINTspc-noctrl/saint.h:246: multiple
definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/saint.o:././src/SAINTspc-noctrl/saint.h:247: multiple
definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/saint.o:././src/SAINTspc-noctrl/saint.h:248: multiple
definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/saint.o:././src/SAINTspc-noctrl/saint.h:249: multiple
definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/saint.o:././src/SAINTspc-noctrl/saint.h:250: multiple
definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setparam.o:././src/SAINTspc-noctrl/saint.h:250: multiple
definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setparam.o:././src/SAINTspc-noctrl/saint.h:249: multiple
definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setparam.o:././src/SAINTspc-noctrl/saint.h:248: multiple
definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setparam.o:././src/SAINTspc-noctrl/saint.h:247: multiple
definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setparam.o:././src/SAINTspc-noctrl/saint.h:246: multiple
definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setparam.o:././src/SAINTspc-noctrl/saint.h:245: multiple
definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setprior.o:././src/SAINTspc-noctrl/saint.h:250: multiple
definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setprior.o:././src/SAINTspc-noctrl/saint.h:249: multiple
definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setprior.o:././src/SAINTspc-noctrl/saint.h:248: multiple
definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setprior.o:././src/SAINTspc-noctrl/saint.h:247: multiple
definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setprior.o:././src/SAINTspc-noctrl/saint.h:246: multiple
definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setprior.o:././src/SAINTspc-noctrl/saint.h:245: multiple
definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setsummary.o:././src/SAINTspc-noctrl/saint.h:250:
multiple definition of `NORMALIZE';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:250: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setsummary.o:././src/SAINTspc-noctrl/saint.h:249:
multiple definition of `modelvar';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:249: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setsummary.o:././src/SAINTspc-noctrl/saint.h:248:
multiple definition of `freqgroup';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:248: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setsummary.o:././src/SAINTspc-noctrl/saint.h:247:
multiple definition of `freq';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:247: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setsummary.o:././src/SAINTspc-noctrl/saint.h:246:
multiple definition of `iter';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:246: first
defined here
/usr/bin/ld:
/<<PKGBUILDDIR>>/build/setsummary.o:././src/SAINTspc-noctrl/saint.h:245:
multiple definition of `burn';
/<<PKGBUILDDIR>>/build/dpalphaIP.o:././src/SAINTspc-noctrl/saint.h:245: first
defined here
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:63: saint-spc-noctrl] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" all
"CFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wl,-z,relro -Wl,-z,now" returned exit code 2
make[1]: *** [debian/rules:10: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:6: build] Error 2
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: saint
Source-Version: 2.5.0+dfsg-4
Done: Nilesh Patra <npatra...@gmail.com>
We believe that the bug you reported is fixed in the latest version of
saint, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 957...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <npatra...@gmail.com> (supplier of updated saint package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 28 Jul 2020 20:55:59 +0530
Source: saint
Architecture: source
Version: 2.5.0+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <npatra...@gmail.com>
Closes: 957772
Changes:
saint (2.5.0+dfsg-4) unstable; urgency=medium
.
* Team Upload.
[ Steffen Moeller ]
* d/u/metadata: yamllint
* Update metadata with ref to conda
.
[ Nilesh Patra ]
* Fix gcc-10 FTBFS (Closes: #957772)
* Drop compate, debhelper-compat 13
* standards version: 4.5.0
* Add "Rules-Requires-Root:no"
* Use secure URI
Checksums-Sha1:
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00a7e522ea3477e7af093a622f6b205a8e010df7 5620 saint_2.5.0+dfsg-4.debian.tar.xz
e2f2b2b5fec48744f4db4ad3b7a32ac379367325 5811
saint_2.5.0+dfsg-4_amd64.buildinfo
Checksums-Sha256:
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saint_2.5.0+dfsg-4.dsc
50fc9624ce6244a6cd8bf472dd3f341883ee84b7f125fa6ba5cb5f80e0befb24 5620
saint_2.5.0+dfsg-4.debian.tar.xz
f90ab8b38feaad726116b87898c29e1c61e6ecfca99e29a65e997b321aa2b62e 5811
saint_2.5.0+dfsg-4_amd64.buildinfo
Files:
157cc199f2bd9ecb6a297fbe61197c73 2003 science optional saint_2.5.0+dfsg-4.dsc
f7ab50cdc0658da2a95b8fc6a0234a7b 5620 science optional
saint_2.5.0+dfsg-4.debian.tar.xz
284344796270f791a53447c7719774d6 5811 science optional
saint_2.5.0+dfsg-4_amd64.buildinfo
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