Your message dated Thu, 23 Jul 2020 13:19:59 +0000 with message-id <e1jyb8h-000epy...@fasolo.debian.org> and subject line Bug#957442: fixed in libgenome 1.3.11+svn20110227.4616-3 has caused the Debian Bug report #957442, regarding libgenome: ftbfs with GCC-10 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 957442: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957442 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:libgenome Version: 1.3.11+svn20110227.4616-2 Severity: normal Tags: sid bullseye User: debian-...@lists.debian.org Usertags: ftbfs-gcc-10 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The severity of this report will be raised before the bullseye release, so nothing has to be done for the buster release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc10-20200225/libgenome_1.3.11+svn20110227.4616-2_unstable_gcc10.log The last lines of the build log are at the end of this report. To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-10/porting_to.html [...] + _ZNSt12_Vector_baseIPN6genome12gnFileContigESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616-2 + _ZNSt12_Vector_baseIPN6genome13gnBaseFeatureESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616-2 + _ZNSt12_Vector_baseIPN6genome13gnBaseFeatureESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616-2 + _ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED1Ev@Base 1.3.11+svn20110227.4616-2 + _ZNSt12_Vector_baseIPN6genome15gnBaseQualifierESaIS2_EED2Ev@Base 1.3.11+svn20110227.4616-2 _ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616-2 _ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616 @@ -630,20 +637,22 @@ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS5_S7_EE@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 1.3.11+svn20110227.4616-2 _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EEaSERKS4_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIPN6genome12gnFileContigESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616-2 +#MISSING: 1.3.11+svn20110227.4616-2# _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome13gnBaseFeatureESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome14gnFragmentSpecESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 @@ -653,19 +662,21 @@ _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIySaIyEE17_M_realloc_insertIJyEEEvN9__gnu_cxx17__normal_iteratorIPyS1_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 1.3.11+svn20110227.4616 + _ZNSt7__cxx1110_List_baseIPKN6genome12gnBaseFilterESaIS4_EE8_M_clearEv@Base 1.3.11+svn20110227.4616-2 (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructIPKcEEvT_S8_St20forward_iterator_tag@Base 1.3.11+svn20110227.4616 - 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--- End Message ---
--- Begin Message ---Source: libgenome Source-Version: 1.3.11+svn20110227.4616-3 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of libgenome, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 957...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libgenome package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 23 Jul 2020 14:59:20 +0200 Source: libgenome Architecture: source Version: 1.3.11+svn20110227.4616-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 957442 Changes: libgenome (1.3.11+svn20110227.4616-3) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Remove trailing whitespace in debian/control (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Trim trailing whitespace. * debian/copyright: use spaces rather than tabs to start continuation lines. * Remove libGenome.la from build to make dh_missing happy * Update symbols for gcc-10 Closes: #957442 Checksums-Sha1: b0d362853f7a4370ebb9ceb5d19a0a058f362e50 2162 libgenome_1.3.11+svn20110227.4616-3.dsc 274ef2d3500c60358bad45e2ab8beb79b9e8d229 10476 libgenome_1.3.11+svn20110227.4616-3.debian.tar.xz 80dd04e58b90212a7355298b9a9bc01a65c979d5 6693 libgenome_1.3.11+svn20110227.4616-3_amd64.buildinfo Checksums-Sha256: 02d254f7a9c21f3c34252ec80dd7bafe3ab6cadd994258b02f9acee7349b3729 2162 libgenome_1.3.11+svn20110227.4616-3.dsc 7bfc6873c4d4ea3fe2bd05104627f90a2a43c84f880cb5625b67789f8c747b8d 10476 libgenome_1.3.11+svn20110227.4616-3.debian.tar.xz bea26c49c4e0fd7945ec633959131c3b066085a59976f01f0eb2acdc1bb9ad0f 6693 libgenome_1.3.11+svn20110227.4616-3_amd64.buildinfo Files: 17bac7c0c8b2303c2ebc58e851da5ca2 2162 science optional libgenome_1.3.11+svn20110227.4616-3.dsc bcc8af040e03de8fe26ad2a6e34e2b03 10476 science optional libgenome_1.3.11+svn20110227.4616-3.debian.tar.xz dde7899967853f984ad634126ba9b7c7 6693 science optional libgenome_1.3.11+svn20110227.4616-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8Zi5MRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGwoQ//XmNJphCL+601EUYK7jg/854pR/EbbVfl 22TJyMF5i1kHL+QX5fUma99+nEvyFs7nf9fYIBSuu7tVuNwmcF4wpVxkEHN0N4+g i68H0klPEDdaVozyJxDc9uBikhYRl40bgIm2T/fN4E2qPHC/4HhyKYUCqMYdBTG9 opG+mrhblPnbnBHCyWkT+Hfnt2NcLAe/UHc7tB9TAQe7snheW/LzRsIMZ7aLvDi0 yYUUoM2N1kmxyFIFiK9Ra0ygdY+dpQkGwPel6ke+Zk9OR3qkDO7SDbyBvmzS6gNh VF70cr0qtkYNIKfgowoVxdOdsN0z/eJ753BcnDe9L9rZRGJZW7dQwAcAgPNsHV3C rHIPbaI4FsuoQN3aIGxUUphfNXc4IFvsNv5Sk6CcoUbr/RhMrqGD2MnRhyUMPTB1 qkUbHJXpN78Mm7mkV9jiBDoxewq6ePIXOBrji6T4/RaqopVDe4hdazTExAopDoEh EtPl9XtShoQx9+VSA3pMNBNVSdcOwCAsvr2id1PkemL6NUIS/VlAXjSSneyy12JE jzY9zOVSREpIpbs0EDrZFcTcqjDFxCrt+pGUQ9879qLmJFcbnfUy9P8CyBsfpffF mCpq3Rdwtjf98Icoq8McOC2FgEHp4PQ1GDcLyfgWT10kAxQGP+D7d6wyki6WGvF2 5Xuas/9NOjQ= =sARy -----END PGP SIGNATURE-----
--- End Message ---
