Your message dated Thu, 23 Jul 2020 10:18:59 +0000 with message-id <e1jyyjx-0006pk...@fasolo.debian.org> and subject line Bug#957425: fixed in libbpp-phyl 2.4.1-4 has caused the Debian Bug report #957425, regarding libbpp-phyl: ftbfs with GCC-10 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 957425: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957425 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:libbpp-phyl Version: 2.4.1-3 Severity: normal Tags: sid bullseye User: debian-...@lists.debian.org Usertags: ftbfs-gcc-10 Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The severity of this report will be raised before the bullseye release, so nothing has to be done for the buster release. The full build log can be found at: http://people.debian.org/~doko/logs/gcc10-20200225/libbpp-phyl_2.4.1-3_unstable_gcc10.log The last lines of the build log are at the end of this report. To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-10/porting_to.html [...] @@ -6207,6 +6558,7 @@ _ZTVN3bpp7YNGP_M9E@Base 2.4.1 _ZTVN3bpp7YpR_GenE@Base 2.4.1 _ZTVN3bpp7YpR_SymE@Base 2.4.1 + _ZTVN3bpp8ClonableE@Base 2.4.1-3 _ZTVN3bpp8YNGP_M10E@Base 2.4.1 _ZTVN3bpp9CoalaCoreE@Base 2.4.1 _ZTVN3bpp9ColMatrixIdEE@Base 2.4.1 @@ -6480,7 +6832,7 @@ _ZTch0_v0_n248_NK3bpp4MG945cloneEv@Base 2.4.1 _ZTch0_v0_n248_NK3bpp4YN985cloneEv@Base 2.4.1 _ZTch0_v0_n280_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.1 - _ZTch0_v0_n280_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1 +#MISSING: 2.4.1-3# _ZTch0_v0_n280_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1 _ZTch0_v0_n280_NK3bpp21PseudoNewtonOptimizer5cloneEv@Base 2.4.1 _ZTch0_v0_n40_N3bpp26RHomogeneousTreeLikelihood17getLikelihoodDataEv@Base 2.4.1 _ZTch0_v0_n40_N3bpp27DRHomogeneousTreeLikelihood17getLikelihoodDataEv@Base 2.4.1 @@ -6508,7 +6860,7 @@ _ZTch0_v0_n40_NK3bpp15StlOutputStream5cloneEv@Base 2.4.1 _ZTch0_v0_n40_NK3bpp16BranchLikelihood5cloneEv@Base 2.4.1 _ZTch0_v0_n40_NK3bpp16GCFrequenciesSet5cloneEv@Base 2.4.1 - _ZTch0_v0_n40_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1 +#MISSING: 2.4.1-3# _ZTch0_v0_n40_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1 _ZTch0_v0_n40_NK3bpp17CanonicalStateMap5cloneEv@Base 2.4.1 _ZTch0_v0_n40_NK3bpp17MvaFrequenciesSet5cloneEv@Base 2.4.1 _ZTch0_v0_n40_NK3bpp17OptimizationTools13ScaleFunction5cloneEv@Base 2.4.1 @@ -7133,7 +7485,7 @@ _ZTcv0_n32_v0_n248_NK3bpp4MG945cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n248_NK3bpp4YN985cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n280_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.1 - _ZTcv0_n32_v0_n280_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1 +#MISSING: 2.4.1-3# _ZTcv0_n32_v0_n280_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n280_NK3bpp21PseudoNewtonOptimizer5cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n40_NK3bpp10BppBoolean5cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n40_NK3bpp11LG10_EX_EHO13EmbeddedModel5cloneEv@Base 2.4.1 @@ -7157,7 +7509,7 @@ _ZTcv0_n32_v0_n40_NK3bpp15StlOutputStream5cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n40_NK3bpp16BranchLikelihood5cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n40_NK3bpp16GCFrequenciesSet5cloneEv@Base 2.4.1 - _ZTcv0_n32_v0_n40_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1 +#MISSING: 2.4.1-3# _ZTcv0_n32_v0_n40_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n40_NK3bpp17CanonicalStateMap5cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n40_NK3bpp17MvaFrequenciesSet5cloneEv@Base 2.4.1 _ZTcv0_n32_v0_n40_NK3bpp17OptimizationTools13ScaleFunction5cloneEv@Base 2.4.1 @@ -8147,6 +8499,7 @@ _ZTv0_n24_N3bpp24BppOFrequenciesSetFormatD0Ev@Base 2.4.1 _ZTv0_n24_N3bpp24BppOFrequenciesSetFormatD1Ev@Base 2.4.1 _ZTv0_n24_N3bpp24BppOParametrizableFormatD0Ev@Base 2.4.1 + _ZTv0_n24_N3bpp24BppOParametrizableFormatD1Ev@Base 2.4.1-3 _ZTv0_n24_N3bpp24ConstantRateDistributionD0Ev@Base 2.4.1 _ZTv0_n24_N3bpp24ConstantRateDistributionD1Ev@Base 2.4.1 _ZTv0_n24_N3bpp24DRASDRTreeLikelihoodDataD0Ev@Base 2.4.1 @@ -8198,6 +8551,7 @@ _ZTv0_n24_N3bpp26RHomogeneousTreeLikelihoodD0Ev@Base 2.4.1 _ZTv0_n24_N3bpp26RHomogeneousTreeLikelihoodD1Ev@Base 2.4.1 _ZTv0_n24_N3bpp26SimpleDiscreteDistributionD0Ev@Base 2.4.1 + _ZTv0_n24_N3bpp26SimpleDiscreteDistributionD1Ev@Base 2.4.1-3 _ZTv0_n24_N3bpp27BppOSubstitutionModelFormatD0Ev@Base 2.4.1 _ZTv0_n24_N3bpp27BppOSubstitutionModelFormatD1Ev@Base 2.4.1 _ZTv0_n24_N3bpp27CodonAdHocSubstitutionModelD0Ev@Base 2.4.1 @@ -9362,5 +9716,6 @@ _ZTv0_n96_NK3bpp24DRASDRTreeLikelihoodData24getNumberOfDistinctSitesEv@Base 2.4.1 _ZTv0_n96_NK3bpp26TreeDrawingListenerAdapter12isAutonomousEv@Base 2.4.1 _ZTv0_n96_NK3bpp28NNIHomogeneousTreeLikelihood16getTopologyValueEv@Base 2.4.1 + _ZZNSt8__detail18__to_chars_10_implImEEvPcjT_E8__digits@Base 2.4.1-3 _Zlt12StringAndIntS_@Base 2.4.1 _Zlt9IntAndIntS_@Base 2.4.1 dh_makeshlibs: error: failing due to earlier errors make: *** [debian/rules:10: binary] Error 25 dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2
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--- Begin Message ---Source: libbpp-phyl Source-Version: 2.4.1-4 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of libbpp-phyl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 957...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libbpp-phyl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 23 Jul 2020 11:44:02 +0200 Source: libbpp-phyl Architecture: source Version: 2.4.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 957425 Changes: libbpp-phyl (2.4.1-4) unstable; urgency=medium . * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Refer to specific version of license GPL-2+. * Fix day-of-week for changelog entry 2.0.3-1. * Update symbols for gcc-10 Closes: #957425 Checksums-Sha1: f92e4199ba3cb052b313d8e40ab8bd8dcaf8c0f1 2158 libbpp-phyl_2.4.1-4.dsc 369d6c17251b7d6804d129b51ef1c94bc73d978b 58108 libbpp-phyl_2.4.1-4.debian.tar.xz ab70bde963488bc681d371ef21a8718042a71d18 7393 libbpp-phyl_2.4.1-4_amd64.buildinfo Checksums-Sha256: 4de4b8b822d4b3e71466d6bf46815257a081f3955c173a8080d0346160d0c233 2158 libbpp-phyl_2.4.1-4.dsc f2a25d1ec50dcb572f86ead73aa59cca1424424b2155b474f14fa5af0544c7f7 58108 libbpp-phyl_2.4.1-4.debian.tar.xz 795a0eed1c3189c92e83b6721425b95294ad8b80a70dba6563c229f8981a6cfc 7393 libbpp-phyl_2.4.1-4_amd64.buildinfo Files: b9f4a440ed84a68ff74ea16169b6192f 2158 science optional libbpp-phyl_2.4.1-4.dsc dfcbc1d6817ba60dee20d6bc322742b2 58108 science optional libbpp-phyl_2.4.1-4.debian.tar.xz 3db4f0db17527baf2eb326c482b497b2 7393 science optional libbpp-phyl_2.4.1-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8ZYPsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGAyg//Y3AjBpwew6oDYi8UeBgFpLBW8oPwcHHa fBp2T4UwHstZLEGJ/A/y26104xMpAWtphrvxU+1ksA/OJxz0y2qpIvh0+6geombc lyQNTzrOggeISNvAiWpVVD4fZ54EG0W+AEvvEQqZWuQr6d+IR+QyuZDRpeu1Kis5 Etpc2k4hb8a03oXVk0G/dZVMMsewr+Zkovi6pX0PAmOPmW4w2nVFrqeYHvKX4xo8 m/d+eKvG116f50ke133numu87RHbIevFYJxrntI7zNo5J6ZH+dJ4fyWhFL940lDN vAJqI50udXZfW1KBCVH9iS3nDh647v5/E+1ckR+PudHpckA/65K7V8mEk0RGhpqs e+M2UwVrRqKuj0j7FOOTaTSIgJgau62M1s3kcVEb8ZBmLeDMO7Gl35YnT7NOGdUP u8bljwf8pP5j1tkh5o0pkvF+xMcebykpgXCubVgdhoOEJTi63e74rlGSs9MLuTXK uDqtAb82K5AMbxug/Omkt2doByn8V7EH4hgvXRW4kMcVW/TJAQUz5O6jZHsMi4lU S72+ZDr7M74+q8qwDkaR901SUmJe1LV7FqwxftMHFq4+279Up5ADaU43jTg5ubAY Wn2K4ekn1lvFOIA7WV4XhbPRWRViQDLfsF5sBYSDluyxdXrS5ZcPiskfT54yEAzo 0nHxODSZQPE= =eG0c -----END PGP SIGNATURE-----
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