Your message dated Wed, 08 Jul 2020 06:37:47 +0000 with message-id <e1jt3if-000a5h...@fasolo.debian.org> and subject line Bug#964315: fixed in openms 2.5.0+cleaned1-5 has caused the Debian Bug report #964315, regarding openms FTBFS on mipsel: cc1plus: out of memory to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 964315: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=964315 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: openms Version: 2.5.0+cleaned1-2 Severity: serious Tags: ftbfs patch https://buildd.debian.org/status/logs.php?pkg=openms&arch=mipsel ... cc1plus: out of memory allocating 1087972 bytes after a total of 105656320 bytes make[5]: *** [src/openms/CMakeFiles/OpenMS.dir/build.make:5266: src/openms/CMakeFiles/OpenMS.dir/source/ANALYSIS/ID/BayesianProteinInferenceAlgorithm.cpp.o] Error 1 Fix/Workaround: --- debian/rules.old 2020-06-15 11:37:20.260388067 +0000 +++ debian/rules 2020-06-15 11:40:03.151168244 +0000 @@ -33,6 +33,11 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all DPKG_EXPORT_BUILDFLAGS = 1 +ifneq (,$(filter $(DEB_HOST_ARCH), mipsel)) + export DEB_CXXFLAGS_MAINT_APPEND += -g1 +endif + + %: dh $@ --buildsystem=cmake --no-parallel
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--- Begin Message ---Source: openms Source-Version: 2.5.0+cleaned1-5 Done: Filippo Rusconi <lopi...@debian.org> We believe that the bug you reported is fixed in the latest version of openms, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 964...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Filippo Rusconi <lopi...@debian.org> (supplier of updated openms package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 08 Jul 2020 00:39:47 +0200 Source: openms Architecture: source Version: 2.5.0+cleaned1-5 Distribution: unstable Urgency: low Maintainer: The Debichem Group <debichem-de...@lists.alioth.debian.org> Changed-By: Filippo Rusconi <lopi...@debian.org> Closes: 964315 Changes: openms (2.5.0+cleaned1-5) unstable; urgency=low . * Fix the bug on mipsel (Closes: #964315). Thanks to Adrian Bunk <b...@debian.org> for the fix. Checksums-Sha1: 912be36a08ac1b0762a9dd2b3e6c7fed309947d7 3020 openms_2.5.0+cleaned1-5.dsc bfd63af44868cea4b67e735a63f79653dac0a7e7 16980 openms_2.5.0+cleaned1-5.debian.tar.xz b396924d984f4aa18e4473d5220530917ca65555 18472 openms_2.5.0+cleaned1-5_amd64.buildinfo Checksums-Sha256: aa91d727cf0fd3b68c7647c179030c75e074088eff97c31ea43e1b012f099927 3020 openms_2.5.0+cleaned1-5.dsc 27dc67bc711e5d50443d760f357cf9dcbadd92de2422eec638fdb39bab8c099f 16980 openms_2.5.0+cleaned1-5.debian.tar.xz 372b953aca8e392b5b9a7006e1894d5d813ace1911cc4a709ddc3fa671e501f8 18472 openms_2.5.0+cleaned1-5_amd64.buildinfo Files: 8d0a382eaed60842483d2c5bdc26384d 3020 science optional openms_2.5.0+cleaned1-5.dsc b83b2a288c8cb9772d580c5bce8575b1 16980 science optional openms_2.5.0+cleaned1-5.debian.tar.xz 370e119353a104567c078d1cffda36a9 18472 science optional openms_2.5.0+cleaned1-5_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAl8FD8gACgkQQatITXaU z0Iz+g/7BzDrPrUOQT7fkZlcPn1TKWyo0EsvwslljZSeNODMsWWqGNHzPepntQDg 8lkfyp4d4N+o8mKiRbbLd46Neo8qKwV8mn5QQOaCoomLg1vpswogmGjDSiTaZopr 8uNGhh9Oqmej2sCLt5vLGzhabfKy2dzIgXAPOJg/6cl0CBAVpa1tLbEmB+UUKAAw BUMRkA67n+XLLeGCUjgB1DDl0HPt9wxiNUuFPlxbvIOYOxDOus5bFjN5P2ButN0N BwXlCNFfO8vEq3Mp5EoTSQooJXVU/1cESljxt3k72UTkGeNIcxX57K60QbBvs7mg pz6x3zPCACs7bhW3vAYngenLSCXMs6uBRrTzrR13PlgTybdPYVqFpu36bE1zcAf9 L0+GKypHEp0D58o4sS+X7xYRqTgG/2oOUZ/3vIPjct+RciEQXSftbVMOdrs/ALf6 39r8VuFWVB9d1nUMQQM7c55RDFKMDw0OfJbRg8U3MlcJhzlBM78Ljd7qNl6mXSXu qja2XFRxKn3SoGCLADlWAWX+h7gMnb/Vj2rGonJztXgvoa2LXMBlsy0Cq5LGuJNz PLoM7f7Jc3BXkTGS/1C6UlgKu7BShUy6DT6UBDDGgWI6/KZ9xmxGdPzjDFrJ0Cec 7Ta2JwYXC2QrVr6SQ7dV8BiKFGhQ1Tv3W75H/WOIjMYdbjtOgyY= =3Awa -----END PGP SIGNATURE-----
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