Source: ncbi-entrez-direct Version: 12.0.20190816+ds-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200620 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' edirect.pl > bin/edirect > chmod +x bin/edirect > echo '#!/bin/sh' > bin/eaddress > echo 'exec /usr/bin/edirect -address "$@"' >> bin/eaddress > chmod +x bin/eaddress > echo '#!/bin/sh' > bin/eblast > echo 'exec /usr/bin/edirect -blast "$@"' >> bin/eblast > chmod +x bin/eblast > echo '#!/bin/sh' > bin/ecitmatch > echo 'exec /usr/bin/edirect -citmatch "$@"' >> bin/ecitmatch > chmod +x bin/ecitmatch > echo '#!/bin/sh' > bin/econtact > echo 'exec /usr/bin/edirect -contact "$@"' >> bin/econtact > chmod +x bin/econtact > echo '#!/bin/sh' > bin/efilter > echo 'exec /usr/bin/edirect -filter "$@"' >> bin/efilter > chmod +x bin/efilter > echo '#!/bin/sh' > bin/elink > echo 'exec /usr/bin/edirect -link "$@"' >> bin/elink > chmod +x bin/elink > echo '#!/bin/sh' > bin/enotify > echo 'exec /usr/bin/edirect -notify "$@"' >> bin/enotify > chmod +x bin/enotify > echo '#!/bin/sh' > bin/epost > echo 'exec /usr/bin/edirect -post "$@"' >> bin/epost > chmod +x bin/epost > echo '#!/bin/sh' > bin/eproxy > echo 'exec /usr/bin/edirect -proxy "$@"' >> bin/eproxy > chmod +x bin/eproxy > echo '#!/bin/sh' > bin/esearch > echo 'exec /usr/bin/edirect -search "$@"' >> bin/esearch > chmod +x bin/esearch > echo '#!/bin/sh' > bin/espell > echo 'exec /usr/bin/edirect -spell "$@"' >> bin/espell > chmod +x bin/espell > echo '#!/bin/sh' > bin/esummary > echo 'exec /usr/bin/edirect -fetch -format docsum "$@"' >> bin/esummary > chmod +x bin/esummary > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-ncbi-data > bin/download-ncbi-data > chmod +x bin/download-ncbi-data > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-pubmed > bin/download-pubmed > chmod +x bin/download-pubmed > mkdir -p bin > sed -e 's/`has-asp`/false # &/' download-sequence > bin/download-sequence > chmod +x bin/download-sequence > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' edirutil > bin/edirutil > chmod +x bin/edirutil > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' ftp-cp > bin/ftp-cp > chmod +x bin/ftp-cp > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' ftp-ls > bin/ftp-ls > chmod +x bin/ftp-ls > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' gbf2xml > bin/gbf2xml > chmod +x bin/gbf2xml > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' nquire > bin/nquire > chmod +x bin/nquire > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' run-ncbi-converter > > bin/run-ncbi-converter > chmod +x bin/run-ncbi-converter > mkdir -p bin > sed -e '1s,^#!/usr/bin/env perl$,#!/usr/bin/perl,' transmute > bin/transmute > chmod +x bin/transmute > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fatih/ > ln -s /usr/share/gocode/src/github.com/fatih/color > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fatih/color > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/gedex/ > ln -s /usr/share/gocode/src/github.com/gedex/inflector > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/gedex/inflector > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost/ > ln -s /usr/share/gocode/src/github.com/klauspost/cpuid > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/klauspost/cpuid > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/ > ln -s /usr/share/gocode/src/github.com/mattn/go-colorable > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/go-colorable > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/ > ln -s /usr/share/gocode/src/github.com/mattn/go-isatty > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/mattn/go-isatty > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/pbnjay/ > ln -s /<<PKGBUILDDIR>>/debian/vendor/github.com/pbnjay/memory > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/pbnjay/memory > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/rainycape/ > ln -s /usr/share/gocode/src/github.com/rainycape/unidecode > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/rainycape/unidecode > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/shirou/ > ln -s /usr/share/gocode/src/github.com/shirou/gopsutil > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/shirou/gopsutil > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/surgebase/ > ln -s /usr/share/gocode/src/github.com/surgebase/porter2 > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/surgebase/porter2 > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/sys/ > ln -s /usr/share/gocode/src/golang.org/x/sys/unix > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/sys/unix > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/ > ln -s /usr/share/gocode/src/golang.org/x/text > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/text > mkdir -p /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fiam > ln -s ../rainycape > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/github.com/fiam/gounidecode > go build -v -gccgoflags '-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro > -Wl,-z,now -Wl,--as-needed' -o bin/j2x j2x.go > go build: when using gc toolchain, please pass compile flags using -gcflags, > and linker flags using -ldflags > github.com/gedex/inflector > command-line-arguments > go build -v -gccgoflags '-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro > -Wl,-z,now -Wl,--as-needed' -o bin/rchive rchive.go common.go > obj-x86_64-linux-gnu/src/golang.org/x/sys/unix/syscall_unix.go:16:2: cannot > find package "golang.org/x/sys/internal/unsafeheader" in any of: > /usr/lib/go-1.14/src/golang.org/x/sys/internal/unsafeheader (from > $GOROOT) > > /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/golang.org/x/sys/internal/unsafeheader > (from $GOPATH) > make[1]: *** [debian/rules:93: bin/rchive] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/06/20/ncbi-entrez-direct_12.0.20190816+ds-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
