Your message dated Thu, 11 Jun 2020 21:34:45 +0000
with message-id <e1jjuqt-0003ri...@fasolo.debian.org>
and subject line Bug#960760: fixed in tree-puzzle 5.3~rc16+dfsg-3
has caused the Debian Bug report #960760,
regarding tree-puzzle FTBFS on !amd64: test failures
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
960760: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960760
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: tree-puzzle
Version: 5.3~rc16+dfsg-1
Severity: serious
Tags: ftbfs
Based on the "Important remark" below, test failures shouldn't be fatal.
This would also make them not suitable for autopkgtest.
https://buildd.debian.org/status/package.php?p=tree-puzzle&suite=sid
...
FAIL: qp-hky-rhet-nucl
======================
Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling
(qp-hky-rhet-nucl)
327c327
< Dasyurus 3 0.00001 0.00268 11 0.07879 0.07178
---
> Dasyurus 3 0.00001 0.00141 11 0.07879 0.07178
FAIL qp-hky-rhet-nucl.test (exit status: 1)
FAIL: qp-hky-rhet-clock-nucl
============================
Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet puzzling
(qp-hky-rhet-clock-nucl)
327c327
< Dasyurus 3 0.00001 0.00268 11 0.07879 0.07178
---
> Dasyurus 3 0.00001 0.00141 11 0.07879 0.07178
FAIL qp-hky-rhet-clock-nucl.test (exit status: 1)
FAIL: qp-jtt-rhet-prot
======================
Testing: protein data, JTT, rate heterogeneity, quartet puzzling
(qp-jtt-rhet-prot)
295c295
< HBA_HUMAN 3 0.01975 0.02293 10 0.74671 0.14184
---
> HBA_HUMAN 3 0.01975 0.02294 10 0.74671 0.14184
FAIL qp-jtt-rhet-prot.test (exit status: 1)
FAIL: qp-jtt-rhet-clock-prot
============================
Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling
(qp-jtt-rhet-clock-prot)
295c295
< HBA_HUMAN 3 0.01975 0.02293 10 0.74671 0.14184
---
> HBA_HUMAN 3 0.01975 0.02294 10 0.74671 0.14184
FAIL qp-jtt-rhet-clock-prot.test (exit status: 1)
FAIL: ut-pure-prot
==================
Testing: protein data, default model, user tree evaluation (ut-pure-prot)
178c178
< HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00105
---
> HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00100
218c218
< HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08777
---
> HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08778
258c258
< HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15663
---
> HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15661
FAIL ut-pure-prot.test (exit status: 1)
FAIL: cons-pure-prot
====================
Testing: protein data, default model, consensus construction (cons-pure-prot)
230c230
< HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08745
---
> HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08746
FAIL cons-pure-prot.test (exit status: 1)
SKIP: build-remark
==================
***
*** !!! Important remark !!!
***
*** Please note that only the output file *.puzzle is checked
*** for identity. The overall precision reached in the program
*** is heavily dependent on the compiler as well as the optimization
*** level (-O) used to compile the executable.
*** Hence, even if tests are marked as failed this might just be
*** due to differences in less significant digits caused by rounding
*** errors from less acurate computations for the sake of faster
*** running times. (If you want to be sure about this please refer
*** to your compiler's manual!)
***
*** Please check the output file differences which are printed during the
tests.
*** The template files which the results are checked against have been
*** generated with TREE-PUZZLE 5.2 compiled with GCC version 3.3-20030226
*** and default compiler flags '-g -O2' and using the SPRNG random number
*** generator.
***
SKIP build-remark (exit status: 77)
============================================================================
Testsuite summary for tree-puzzle 5.3.rc16
============================================================================
# TOTAL: 19
# PASS: 11
# SKIP: 2
# XFAIL: 0
# FAIL: 6
# XPASS: 0
# ERROR: 0
============================================================================
See tests/test-suite.log
============================================================================
make[5]: *** [Makefile:563: test-suite.log] Error 1
make[5]: Leaving directory '/<<PKGBUILDDIR>>/tests'
--- End Message ---
--- Begin Message ---
Source: tree-puzzle
Source-Version: 5.3~rc16+dfsg-3
Done: Pranav Ballaney <ballaneypra...@gmail.com>
We believe that the bug you reported is fixed in the latest version of
tree-puzzle, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 960...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pranav Ballaney <ballaneypra...@gmail.com> (supplier of updated tree-puzzle
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 11 Jun 2020 05:21:30 +0530
Source: tree-puzzle
Architecture: source
Version: 5.3~rc16+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Pranav Ballaney <ballaneypra...@gmail.com>
Closes: 960760
Changes:
tree-puzzle (5.3~rc16+dfsg-3) unstable; urgency=medium
.
* Team upload.
* Update changelog to fix a bug
* Reduce decimals for testing (Closes: #960760)
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