Your message dated Wed, 27 May 2020 20:37:16 +0000
with message-id <e1je2nc-000gab...@fasolo.debian.org>
and subject line Bug#961591: fixed in r-bioc-graph 1.66.0-2
has caused the Debian Bug report #961591,
regarding r-bioc-graph: autopkgtest regression
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
961591: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961591
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-bioc-graph
Version: 1.66.0-1
Severity: serious
X-Debbugs-CC: debian...@lists.debian.org
User: debian...@lists.debian.org
Usertags: regression
Hi Maintainer
Since the upload of 1.66.0-1, r-bioc-graph has been failing its own
autopkgtests [1]. This now prevents the migration of r-base.
I've copied what I hope is the relevant part of the log below.
Regards
Graham
[1] https://ci.debian.net/packages/r/r-bioc-graph/unstable/amd64/
> BiocGenerics:::testPackage("graph", pattern="_test.R")
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
anyDuplicated, append, as.data.frame, basename, cbind, colnames,
dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Timing stopped at: 0.002 0 0.002
Error in checkEquals("not a node: 'not-a-node'", conditionMessage(ans)) :
1 string mismatch
RUNIT TEST PROTOCOL -- Tue May 26 07:01:18 2020
***********************************************
Number of test functions: 206
Number of errors: 0
Number of failures: 1
1 Test Suite :
graph RUnit Tests - 206 test functions, 0 errors, 1 failure
FAILURE in testInEdges: Error in checkEquals("not a node:
'not-a-node'", conditionMessage(ans)) :
1 string mismatch
Test files with failing tests
graphNEL_test.R
testInEdges
Error in BiocGenerics:::testPackage("graph", pattern = "_test.R") :
unit tests failed for package graph
Execution halted
autopkgtest [07:01:18]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [07:01:18]: test pkg-r-autopkgtest: - - - - - - - - - -
results - - - - - - - - - -
pkg-r-autopkgtest FAIL non-zero exit status 1
--- End Message ---
--- Begin Message ---
Source: r-bioc-graph
Source-Version: 1.66.0-2
Done: Nilesh Patra <npatra...@gmail.com>
We believe that the bug you reported is fixed in the latest version of
r-bioc-graph, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 961...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <npatra...@gmail.com> (supplier of updated r-bioc-graph package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 27 May 2020 21:45:43 +0200
Source: r-bioc-graph
Architecture: source
Version: 1.66.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Nilesh Patra <npatra...@gmail.com>
Closes: 961591
Changes:
r-bioc-graph (1.66.0-2) unstable; urgency=medium
.
* Team Upload.
.
[ Dylan Aïssi ]
* Fix tab-in-license-text
.
[ Nilesh Patra ]
* Fix incompatible unicode (Closes: #961591)
* Bump compat version to 13
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r-bioc-graph_1.66.0-2.debian.tar.xz
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r-bioc-graph_1.66.0-2_amd64.buildinfo
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r-bioc-graph_1.66.0-2_amd64.buildinfo
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3e1a47a6ff85f86655a8a188fe0a41b9 4960 gnu-r optional
r-bioc-graph_1.66.0-2.debian.tar.xz
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r-bioc-graph_1.66.0-2_amd64.buildinfo
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