[ debian-s390 added ]
On Thu, May 21, 2020 at 05:03:19PM +0100, peter green wrote:
> Source: python-cobra
> Version: 0.18.0-1
> Severity: serious
>
> Three of the last four builds of python-cobra on s390x have failed with.
>
> > =================================== FAILURES
> > ===================================
> > ___________ test_model_summary_to_frame_with_fva[optlang-glpk-0.95]
> > ____________
> >
> > model = <Model e_coli_core at 0x3ff6e63b3d0>, opt_solver = 'optlang-glpk'
> > fraction = 0.95
> >
> > @pytest.mark.parametrize("fraction", [0.95])
> > def test_model_summary_to_frame_with_fva(model, opt_solver, fraction):
> > """Test model summary.to_frame() (using FVA)."""
> > if opt_solver == "optlang-gurobi":
> > pytest.xfail("FVA currently buggy")
> > # test non-fva version (these should be fixed for textbook model)
> > expected_in_fluxes = ['o2_e', 'glc__D_e', 'nh4_e', 'pi_e', np.nan,
> > np.nan, np.nan, np.nan, np.nan, np.nan,
> > np.nan,
> > np.nan]
> > expected_out_fluxes = ['h2o_e', 'co2_e', 'h_e', 'for_e', 'ac_e',
> > 'acald_e',
> > 'pyr_e', 'etoh_e', 'lac__D_e', 'succ_e',
> > 'akg_e',
> > 'glu__L_e']
> > model.solver = opt_solver
> > solution = model.optimize()
> > out_df = model.summary(solution, fva=fraction).to_frame()
> > assert out_df[('IN_FLUXES', 'ID')].tolist() == expected_in_fluxes
> > > assert out_df[('OUT_FLUXES', 'ID')].tolist() == expected_out_fluxes
> > E AssertionError: assert ['h2o_e', 'co... 'pyr_e', ...] == ['h2o_e',
> > 'co2...acald_e', ...]
> > E At index 5 diff: 'pyr_e' != 'acald_e'
> > E Use -v to get the full diff
>
Can an s390x porter please have a look?
Thanks
Adrian
