Source: r-bioc-chemminer
Version: 3.38.0+dfsg-3
Severity: serious
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-chemminer/5030571/log.gz
...
RUNIT TEST PROTOCOL -- Fri Apr 17 15:28:55 2020
***********************************************
Number of test functions: 24
Number of deactivated test functions: 7
Number of errors: 2
Number of failures: 0
1 Test Suite :
ChemmineR RUnit Tests - 24 test functions, 2 errors, 0 failures
DEACTIVATED test_ea.comparison: local test
DEACTIVATED test_ea.dupDescriptors: local test only
DEACTIVATED test.3dCoords: causing timeout on bioc, disabling for now
ERROR in test.formatConversions: Error : Forbidden
DEACTIVATED test.genAPDescriptors: removed old version of function
DEACTIVATED test.largestComponent: just for manual testing
DEACTIVATED test.parseV3000: requires local files
DEACTIVATED test.propOB: fails on ubuntu 16.04
ERROR in test.pubchemPUG: Error :
Test files with failing tests
test_db.R
test_ea.comparison
test_ea.dupDescriptors
test_general.R
test.3dCoords
test.formatConversions
test.genAPDescriptors
test.largestComponent
test.parseV3000
test.propOB
test.pubchemPUG
Error in BiocGenerics:::testPackage("ChemmineR") :
unit tests failed for package ChemmineR
In addition: Warning messages:
1: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return
= TRUE, :
there is no package called ‘ChemmineOB’
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return
= TRUE, :
there is no package called ‘ChemmineOB’
Execution halted
autopkgtest [15:28:55]: test pkg-r-autopkgtest: -----------------------]
autopkgtest [15:28:55]: test pkg-r-autopkgtest: - - - - - - - - - - results -
- - - - - - - - -
pkg-r-autopkgtest FAIL non-zero exit status 1
I think "Testsuite: autopkgtest-pkg-r" is just the same problem as
the one documented in debian/tests/control_needs_r-bioc-chemmineob
(BTW: r-bioc-chemmineob is not in Debian at all.)
