On Mon, May 18, 2020 at 01:27:52AM +0000, Antoni Villalonga wrote: > For some reason I din't included all my previous work on my merge request.
I suspect this "some reason" was that salsa and other infrastructure of Debian went offline at that day for several hours. > I've recovered most of it from a binary package I've found on my machine. And > after lot of hours I've found the python module naming issue (see d/rules > changes). > > All changes are now included on: > https://salsa.debian.org/med-team/kmer/-/merge_requests/4 I've merged this and tried a test build including running autopkgtest in my pbuilder environment. Unfortunately the latter test is now failing with ... autopkgtest [06:48:10]: test atac-unit-test: [----------------------- Rewriting '/tmp/autopkgtest.jgVuO6/autopkgtest_tmp/GCF_000195855.1_ASM19585v1_genomic.fna' to '/tmp/autopkgtest.jgVuO6/autopkgtest_tmp/meryldir/Lepr.fasta', removing newlines. Rewriting '/tmp/autopkgtest.jgVuO6/autopkgtest_tmp/GCF_000195955.2_ASM19595v2_genomic.fna' to '/tmp/autopkgtest.jgVuO6/autopkgtest_tmp/meryldir/Tuber.fasta', removing newlines. /usr/bin/meryl -B -C -threads 2 -m 20 -s /tmp/autopkgtest.jgVuO6/autopkgtest_tmp/meryldir/Lepr.fasta -o /tmp/autopkgtest.jgVuO6/autopkgtest_tmp/meryldir/Lepr.ms20 fastaFile::constructIndex()-- magic mismatch. fastaFile::constructIndex()-- magic mismatch. bitPackedFile::bitPackedFile()-- failed to open and truncate '/tmp/autopkgtest.jgVuO6/autopkgtest_tmp/meryldir/Lepr.ms20.batch0.mcidx': No such file or directory Failed to count mers in Lepr autopkgtest [06:48:10]: test atac-unit-test: -----------------------] autopkgtest [06:48:11]: test atac-unit-test: - - - - - - - - - - results - - - - - - - - - - atac-unit-test FAIL non-zero exit status 2 ... I admit I personally have no idea why this fails. > Sorry for the long delay and the childish mistake. No need to sorry here and there are no childish mistakes. Your contribution is perfectly welcome and absolutely helpful. > Best regrads, > > PS: d/changelog is unmodified in my last MR. Probably should include a > reference to close this bug. I added an according changelog entry. Thanks for the hint. Kind regards and thanks again for your contribution Andreas. -- http://fam-tille.de
