Your message dated Thu, 07 May 2020 05:04:17 +0000 with message-id <e1jwyhl-0000o4...@fasolo.debian.org> and subject line Bug#959850: fixed in t-coffee 13.41.0.28bdc39+dfsg-3 has caused the Debian Bug report #959850, regarding t-coffee-examples: missing Breaks+Replaces: t-coffee (<< 13) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 959850: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=959850 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: t-coffee-examples Version: 13.41.0.28bdc39+dfsg-1 Severity: serious User: debian...@lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'buster'. It installed fine in 'buster', then the upgrade to 'bullseye' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces >From the attached log (scroll to the bottom...): Preparing to unpack .../t-coffee-examples_13.41.0.28bdc39+dfsg-1_all.deb ... Unpacking t-coffee-examples (13.41.0.28bdc39+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/t-coffee-examples_13.41.0.28bdc39+dfsg-1_all.deb (--unpack): trying to overwrite '/usr/share/doc/t-coffee/examples/block1.aln', which is also in package t-coffee 12.00.7fb08c2-4 dpkg-deb: error: paste subprocess was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/t-coffee-examples_13.41.0.28bdc39+dfsg-1_all.deb cheers, Andreas
t-coffee=12.00.7fb08c2-4_t-coffee-examples=13.41.0.28bdc39+dfsg-1.log.gz
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--- Begin Message ---Source: t-coffee Source-Version: 13.41.0.28bdc39+dfsg-3 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of t-coffee, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 959...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated t-coffee package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 07 May 2020 06:37:00 +0200 Source: t-coffee Architecture: source Version: 13.41.0.28bdc39+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 959850 Changes: t-coffee (13.41.0.28bdc39+dfsg-3) unstable; urgency=medium . [ Aaron M. Ucko ] * Better way to deal with .pl extension in blast tools . [ Andreas Tille ] * Breaks+Replaces: t-coffee (<< 13) Closes: #959850 Checksums-Sha1: 63c1a837c51b5be6b5a750facb12395f55d9d442 2211 t-coffee_13.41.0.28bdc39+dfsg-3.dsc 4e63e06f9327eed7530cd705108c265c5ed2572e 16620 t-coffee_13.41.0.28bdc39+dfsg-3.debian.tar.xz c23092ab0c8a5726e964a7f604de09670710c56f 6237 t-coffee_13.41.0.28bdc39+dfsg-3_amd64.buildinfo Checksums-Sha256: 00509b16b6780be2036642108293c92c6d6a575dd29f87e1a750a6b8129f6660 2211 t-coffee_13.41.0.28bdc39+dfsg-3.dsc ff178bd389a5d5b9c3f9da8ea8e3cd37229dd112e3e5d8ed39f069688f7de6bd 16620 t-coffee_13.41.0.28bdc39+dfsg-3.debian.tar.xz 3dbfaf04cf5d3dcdef7e680d700b85790f8960bf5bcbb436220ef3b936374bb9 6237 t-coffee_13.41.0.28bdc39+dfsg-3_amd64.buildinfo Files: bd5946ac412c8cd4b1d6b5c4f5d685e0 2211 science optional t-coffee_13.41.0.28bdc39+dfsg-3.dsc 39269879cb16c47d744dcc21d7fe72be 16620 science optional t-coffee_13.41.0.28bdc39+dfsg-3.debian.tar.xz de071b41a8fbc7a621a06a6d0187fd4c 6237 science optional t-coffee_13.41.0.28bdc39+dfsg-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6zkoQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHBfA//WybN/KWODNnmszLTPz/nkvY9fBmW/u/K xiQ3uPW3Ri41Cum7E16tVhdU7n8rYZ8c23a/JPhGAqeEmAQTvlGK9+DFInxYppOA 2uGKg8gSPzmVyVHggQtIbXM1jKEkDym0Jrr0s89oliccFXzVkrH+1NMiDZf2uN+3 qJx9EVV93w2tzQDum5ToxVC1MB8S1C//5patUvEmDJX9/its0MKAPvjMgnDXUgCO Pajp4K7s+boDR8b/QQi6mwqJFHG4S3dDhDj4l1SQ9pTtGpcIwaSz5XbYRrQengU2 8/CawaFTTow1UNLaOqv9lfDCYpVp7wkakvhKeTw8GjJLsZtFAR33hJtl2jWy1L0W 61jKTY64ZwxMhdMjJ76DlinlcHABKbedfjGYMJC3pfGD585q22gATYRsTAp22Ggc GRLff7p3p+ZMM/rbd77uySQdCpxwjSoD41eqUdbV59acGHnFpyN0//Zri1VSl89I XODnRx1Ens7UTZLytN5B2IwyI9N4hluKJrnaI8pZvekyLp90hA+qfdfyvHj9KrYw UuOJ2XmydA4hbPJGFVzS7xhO87rY0jXu7pPGEswGJ/FYWHuyONFeXXxezQwdU6lq rGdPUUY0TEdpw9q1pnpVtZr863HvdSxPh7pWvEWwAFnp5YERtOu/Zd2oCmTU5FUd T9edYzmpt4c= =SB5b -----END PGP SIGNATURE-----
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